Variant report

Variant	rs62321990
Chromosome Location	chr4:95359772-95359773
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10003483	0.82[ASN][1000 genomes]
rs10516951	0.93[EUR][1000 genomes]
rs12331549	0.83[AMR][1000 genomes]
rs17021822	1.00[AMR][1000 genomes]
rs3805298	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62316379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62319391	1.00[AMR][1000 genomes]
rs62320936	1.00[AFR][1000 genomes]
rs62321986	1.00[AFR][1000 genomes]
rs62321987	1.00[AFR][1000 genomes]
rs62321988	1.00[AFR][1000 genomes]
rs62321991	0.82[ASN][1000 genomes]
rs62321992	0.82[ASN][1000 genomes]
rs62321993	0.82[ASN][1000 genomes]
rs62321994	0.82[ASN][1000 genomes]
rs62321996	0.82[ASN][1000 genomes]
rs6843496	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95357800-95360000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:95357800-95361000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:95358200-95363400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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