Variant report

Variant	rs3805366
Chromosome Location	chr17:46246894-46246895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46243746..46245329-chr17:46246193..46248900,2	K562	blood:
2	chr17:46231216..46232855-chr17:46246120..46247924,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12373126	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17617010	1.00[CHB][hapmap]
rs3805364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3805368	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56937221	0.87[ASN][1000 genomes]
rs66479254	0.81[ASN][1000 genomes]
rs66490008	0.93[ASN][1000 genomes]
rs66652835	0.81[ASN][1000 genomes]
rs66727366	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs66727715	0.87[ASN][1000 genomes]
rs66743695	0.87[ASN][1000 genomes]
rs66753385	1.00[ASN][1000 genomes]
rs66950931	0.87[ASN][1000 genomes]
rs67162925	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs67230974	0.81[ASN][1000 genomes]
rs67275838	0.93[ASN][1000 genomes]
rs67307876	0.87[ASN][1000 genomes]
rs67412675	0.87[ASN][1000 genomes]
rs67647500	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67940055	1.00[ASN][1000 genomes]
rs67991353	0.93[ASN][1000 genomes]
rs68092669	1.00[ASN][1000 genomes]
rs68144131	0.84[ASN][1000 genomes]
rs72825550	0.93[ASN][1000 genomes]
rs73320817	0.93[ASN][1000 genomes]
rs73320825	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73324737	0.87[ASN][1000 genomes]
rs73332969	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs8071778	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46216400-46251400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:46220800-46249000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:46236000-46250200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr17:46238200-46250800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46239200-46253800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr17:46240000-46250400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:46241000-46250200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr17:46241000-46253200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr17:46241200-46247400	Weak transcription	Stomach Mucosa	stomach
10	chr17:46244800-46249200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr17:46245000-46252200	Weak transcription	GM12878-XiMat	blood
12	chr17:46245400-46250800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr17:46245800-46250600	Strong transcription	Primary T cells from cord blood	blood
14	chr17:46246000-46247800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr17:46246000-46248400	Enhancers	Fetal Brain Male	brain
16	chr17:46246200-46250200	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr17:46246400-46247000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr17:46246400-46247800	Strong transcription	Fetal Thymus	thymus
19	chr17:46246400-46248000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr17:46246400-46248400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr17:46246600-46247400	Strong transcription	Thymus	Thymus
22	chr17:46246600-46247800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
23	chr17:46246600-46250200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr17:46246800-46248400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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