Variant report

Variant	rs68092669
Chromosome Location	chr17:46272670-46272671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46100886..46103222-chr17:46270913..46273515,2	MCF-7	breast:
2	chr17:46271988..46273516-chr17:46652806..46654859,2	K562	blood:
3	chr17:46263314..46264910-chr17:46270431..46272885,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120093	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12373126	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3805364	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805366	1.00[ASN][1000 genomes]
rs3805368	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56937221	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66479254	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66490008	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66652835	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66727366	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66727715	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66743695	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66753385	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66950931	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67162925	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67230974	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67275838	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67307876	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67412675	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67647500	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67940055	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67991353	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68144131	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72825550	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72825592	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73320817	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73320825	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73324737	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73332969	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46251200-46277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:46265800-46276200	Weak transcription	GM12878-XiMat	blood
3	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
4	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr17:46270800-46272800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr17:46270800-46272800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:46270800-46272800	Enhancers	HSMM	muscle
8	chr17:46271000-46273200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr17:46271000-46273200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr17:46271000-46273600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr17:46271000-46274200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:46271000-46274600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr17:46271200-46273400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr17:46271200-46273600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr17:46271200-46274200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr17:46271400-46273000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:46271400-46273200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr17:46271400-46273400	Genic enhancers	Primary T cells from cord blood	blood
19	chr17:46271400-46273600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr17:46272200-46276200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr17:46272200-46277000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr17:46272400-46273800	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr17:46272400-46276000	Weak transcription	A549	lung
24	chr17:46272400-46276200	Weak transcription	HUVEC	blood vessel
25	chr17:46272600-46274800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr17:46272600-46275400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links