Variant report

Variant	rs72825592
Chromosome Location	chr17:46313445-46313446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46312728..46315303-chr17:46319981..46321510,2	MCF-7	breast:
2	chr17:46312738..46316050-chr17:46317088..46320426,4	K562	blood:
3	chr17:46312503..46315307-chr17:46333530..46335778,2	K562	blood:
4	chr17:46300434..46303354-chr17:46310850..46313600,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12373126	0.91[AMR][1000 genomes]
rs3805364	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3805368	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56937221	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66479254	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66490008	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66652835	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66727366	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66727715	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66743695	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66753385	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66950931	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67162925	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67230974	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67275838	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67307876	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67412675	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67647500	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67940055	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67991353	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs68092669	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs68144131	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72825550	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72827821	1.00[AFR][1000 genomes]
rs72827823	1.00[AFR][1000 genomes]
rs72827884	1.00[AFR][1000 genomes]
rs73320817	1.00[AMR][1000 genomes]
rs73320825	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73324737	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73332969	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:46295800-46314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr17:46297600-46314400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46301200-46314000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:46302600-46315800	Weak transcription	GM12878-XiMat	blood
9	chr17:46303400-46314200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr17:46305200-46317600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr17:46306400-46314200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
13	chr17:46309200-46314600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr17:46310200-46315800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:46310600-46314400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr17:46311600-46314400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr17:46312400-46315400	Enhancers	NHEK	skin
18	chr17:46312800-46314000	Enhancers	A549	lung
19	chr17:46312800-46315200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr17:46312800-46315400	Enhancers	HMEC	breast
21	chr17:46312800-46318800	Enhancers	HUVEC	blood vessel
22	chr17:46313000-46315400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr17:46313000-46315400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr17:46313000-46318000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr17:46313200-46314000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr17:46313200-46314600	Weak transcription	Primary T cells from cord blood	blood
27	chr17:46313400-46316400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr17:46313400-46316400	Weak transcription	Primary T cells fromperipheralblood	blood

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