Variant report

Variant	rs3806039
Chromosome Location	chr6:70859048-70859049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10214833	1.00[CEU][hapmap];0.85[MEX][hapmap]
rs10485243	0.81[ASN][1000 genomes]
rs11964071	1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs1517046	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs16868656	1.00[GIH][hapmap]
rs17712597	0.81[ASN][1000 genomes]
rs2093374	0.85[CHD][hapmap];0.81[ASN][1000 genomes]
rs2145905	0.81[ASN][1000 genomes]
rs2296009	0.83[EUR][1000 genomes]
rs3793057	0.81[ASN][1000 genomes]
rs3806029	0.81[ASN][1000 genomes]
rs3806043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3828770	0.81[ASN][1000 genomes]
rs514586	1.00[GIH][hapmap]
rs515597	1.00[GIH][hapmap]
rs60319887	0.81[ASN][1000 genomes]
rs609454	1.00[GIH][hapmap]
rs612668	1.00[GIH][hapmap]
rs613109	1.00[GIH][hapmap]
rs72916705	0.81[ASN][1000 genomes]
rs72916716	0.81[ASN][1000 genomes]
rs72916722	0.81[ASN][1000 genomes]
rs72916728	0.81[ASN][1000 genomes]
rs72916731	0.81[ASN][1000 genomes]
rs72916747	0.84[ASN][1000 genomes]
rs72916750	0.84[ASN][1000 genomes]
rs72916752	0.84[ASN][1000 genomes]
rs72916754	0.89[ASN][1000 genomes]
rs72916780	0.89[ASN][1000 genomes]
rs737330	0.81[ASN][1000 genomes]
rs9454982	0.85[CHD][hapmap];0.81[ASN][1000 genomes]
rs9454984	0.81[ASN][1000 genomes]
rs9454991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70842400-70875200	Weak transcription	GM12878-XiMat	blood
2	chr6:70847600-70874800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr6:70849200-70860600	Weak transcription	Psoas Muscle	Psoas
4	chr6:70856200-70899400	Weak transcription	Left Ventricle	heart
5	chr6:70859000-70863800	Strong transcription	Primary B cells from cord blood	blood

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