Variant report

Variant	rs72916754
Chromosome Location	chr6:70850257-70850258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10485243	0.91[ASN][1000 genomes]
rs11964071	0.94[ASN][1000 genomes]
rs17712597	0.91[ASN][1000 genomes]
rs2093374	0.91[ASN][1000 genomes]
rs2145905	0.91[ASN][1000 genomes]
rs3793057	0.91[ASN][1000 genomes]
rs3806029	0.91[ASN][1000 genomes]
rs3806039	0.89[ASN][1000 genomes]
rs3806043	1.00[ASN][1000 genomes]
rs3828770	0.91[ASN][1000 genomes]
rs60319887	0.91[ASN][1000 genomes]
rs72916705	0.91[ASN][1000 genomes]
rs72916716	0.91[ASN][1000 genomes]
rs72916722	0.91[ASN][1000 genomes]
rs72916728	0.91[ASN][1000 genomes]
rs72916731	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72916747	0.94[ASN][1000 genomes]
rs72916750	0.94[ASN][1000 genomes]
rs72916752	0.94[ASN][1000 genomes]
rs72916780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737330	0.91[ASN][1000 genomes]
rs7755777	0.86[ASN][1000 genomes]
rs9454982	0.91[ASN][1000 genomes]
rs9454984	0.91[ASN][1000 genomes]
rs9454991	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70842400-70875200	Weak transcription	GM12878-XiMat	blood
2	chr6:70845600-70851600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:70846800-70850600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:70847600-70874800	Strong transcription	Primary B cells from peripheral blood	blood
5	chr6:70848800-70851400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:70849200-70851800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:70849200-70860600	Weak transcription	Psoas Muscle	Psoas

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