Variant report

Variant	rs3806653
Chromosome Location	chr3:101396972-101396973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:79)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:79 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:101396644-101397211	HUVEC	blood vessel:	n/a	n/a
2	MAZ	chr3:101394320-101397368	IMR90	lung:	n/a	chr3:101395299-101395309 chr3:101395419-101395429
3	POLR2A	chr3:101396567-101397447	H1-neurons	neurons:	n/a	n/a
4	POLR2A	chr3:101396635-101397267	U87	brain:	n/a	n/a
5	POLR2A	chr3:101396548-101397565	ECC-1	luminal epithelium:	n/a	n/a
6	CTCF	chr3:101394836-101397094	A549	lung:	n/a	chr3:101395264-101395277 chr3:101395109-101395122 chr3:101395182-101395195
7	POLR2A	chr3:101394831-101397438	K562	blood:	n/a	n/a
8	POLR2A	chr3:101394802-101397455	GM12891	blood:	n/a	n/a
9	POLR2A	chr3:101394796-101397422	K562	blood:	n/a	n/a
10	POLR2A	chr3:101394820-101397544	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr3:101394829-101397580	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr3:101394822-101397327	K562	blood:	n/a	n/a
13	POLR2A	chr3:101395665-101400050	PANC-1	pancreas:	n/a	n/a
14	POLR2A	chr3:101395783-101401679	K562	blood:	n/a	n/a
15	PML	chr3:101396699-101397174	K562	blood:	n/a	n/a
16	POLR2A	chr3:101395767-101397396	K562	blood:	n/a	n/a
17	ZMIZ1	chr3:101396672-101397128	K562	blood:	n/a	n/a
18	POLR2A	chr3:101396570-101397368	K562	blood:	n/a	n/a
19	HEY1	chr3:101396879-101397062	HepG2	liver:	n/a	n/a
20	CHD2	chr3:101396751-101397110	K562	blood:	n/a	n/a
21	POLR2A	chr3:101394818-101397345	GM12878	blood:	n/a	n/a
22	POLR2A	chr3:101394832-101397436	HUVEC	blood vessel:	n/a	n/a
23	POLR2A	chr3:101396571-101397543	HL-60	blood:	n/a	n/a
24	POLR2A	chr3:101394844-101400076	K562	blood:	n/a	n/a
25	POLR2A	chr3:101396818-101397308	HUVEC	blood vessel:	n/a	n/a
26	POLR2A	chr3:101394852-101397435	ECC-1	luminal epithelium:	n/a	n/a
27	POLR2A	chr3:101394835-101398218	MCF-7	breast:	n/a	n/a
28	POLR2A	chr3:101394730-101397538	GM12878	blood:	n/a	n/a
29	POLR2A	chr3:101396597-101397151	GM12878	blood:	n/a	n/a
30	POLR2A	chr3:101394797-101397461	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr3:101396559-101397487	HL-60	blood:	n/a	n/a
32	POLR2A	chr3:101394761-101397438	Hela-S3	cervix:	n/a	n/a
33	POLR2A	chr3:101396718-101397114	HCT-116	colon:	n/a	n/a
34	POLR2A	chr3:101394371-101397465	IMR90	lung:	n/a	n/a
35	TEAD4	chr3:101396694-101397320	K562	blood:	n/a	n/a
36	POLR2A	chr3:101396557-101397210	PFSK-1	brain:	n/a	n/a
37	POU2F2	chr3:101396614-101397003	GM12891	blood:	n/a	n/a
38	POLR2A	chr3:101394709-101398094	GM12892	blood:	n/a	n/a
39	POLR2A	chr3:101394548-101402463	H1-hESC	embryonic stem cell:	n/a	n/a
40	POLR2A	chr3:101396613-101397334	GM12878	blood:	n/a	n/a
41	POLR2A	chr3:101396599-101397091	H1-hESC	embryonic stem cell:	n/a	n/a
42	PML	chr3:101396675-101397432	GM12878	blood:	n/a	n/a
43	POLR2A	chr3:101395711-101397432	HepG2	liver:	n/a	n/a
44	POLR2A	chr3:101394853-101397403	GM18505	blood:	n/a	n/a
45	POLR2A	chr3:101396765-101397372	U87	brain:	n/a	n/a
46	BCL3	chr3:101395598-101396985	A549	lung:	n/a	n/a
47	POLR2A	chr3:101394445-101400158	SK-N-MC	brain:	n/a	n/a
48	POLR2A	chr3:101394811-101397161	NB4	blood:	n/a	n/a
49	POLR2A	chr3:101394683-101399918	GM12892	blood:	n/a	n/a
50	MAX	chr3:101396874-101397495	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:101396566..101398165-chr3:101452263..101453813,2	MCF-7	breast:
2	chr3:101394090..101397025-chr3:101443461..101445928,3	K562	blood:
3	chr3:101291104..101295547-chr3:101393750..101397705,12	MCF-7	breast:
4	chr3:101293308..101296113-chr3:101394030..101397396,3	MCF-7	breast:
5	chr3:101279766..101282378-chr3:101395488..101397376,2	MCF-7	breast:
6	chr3:100119980..100121652-chr3:101394464..101397120,2	K562	blood:
7	chr3:101396655..101397589-chr7:139044216..139044889,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ZBTB11	TF binding region
ENSG00000273391	Chromatin interaction
ENSG00000242299	Chromatin interaction
ENSG00000146963	Chromatin interaction
ENSG00000081154	Chromatin interaction
ENSG00000174173	Chromatin interaction
ENSG00000182504	Chromatin interaction
ENSG00000206535	Chromatin interaction
ENSG00000154174	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1031710	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1056579	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1138818	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706986	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11707250	0.96[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]
rs11710533	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11710805	0.85[ASN][1000 genomes]
rs11711079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11711903	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap]
rs11712309	0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11712748	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11714278	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11714444	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap]
rs11717046	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11717638	0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11718446	0.81[JPT][hapmap]
rs11720745	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11914318	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11917569	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11917682	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11919389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11923273	0.83[AMR][1000 genomes]
rs11924013	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11925001	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12629658	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12629954	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12633089	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap]
rs12635128	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12636557	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12639028	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13059470	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13060963	0.87[ASN][1000 genomes]
rs13061565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13065944	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.87[ASN][1000 genomes]
rs13066768	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.92[ASN][1000 genomes]
rs13068350	0.81[ASN][1000 genomes]
rs13069443	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13077703	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13077925	0.92[ASN][1000 genomes]
rs13081846	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13082236	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13084113	0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs13084432	0.81[ASN][1000 genomes]
rs13085776	0.96[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap]
rs13094753	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap]
rs13096323	0.83[ASN][1000 genomes]
rs13099674	0.92[ASN][1000 genomes]
rs13100262	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1460097	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap]
rs17345528	0.83[GIH][hapmap];0.95[JPT][hapmap]
rs17347156	0.96[CEU][hapmap];0.86[CHB][hapmap]
rs17411983	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1963961	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1963962	0.92[ASN][1000 genomes]
rs2288272	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2290859	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap]
rs2303474	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2318090	0.92[ASN][1000 genomes]
rs3094295	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3094296	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3094297	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3109756	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34181125	0.92[ASN][1000 genomes]
rs34301719	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34376498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.92[ASN][1000 genomes]
rs34624546	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34883763	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35117343	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35850993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36002990	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36060163	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3762729	0.95[JPT][hapmap]
rs3804775	0.83[GIH][hapmap];0.95[JPT][hapmap]
rs3804778	0.83[GIH][hapmap];0.95[JPT][hapmap]
rs3806654	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3864012	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4342086	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]
rs55654108	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55821257	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55859364	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56291106	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59596156	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62282218	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62282255	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62284162	0.83[EUR][1000 genomes]
rs62284198	0.92[ASN][1000 genomes]
rs62284199	0.92[ASN][1000 genomes]
rs6768327	0.80[ASN][1000 genomes]
rs71625262	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7629753	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7645391	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7651406	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7651721	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9830943	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs997739	0.83[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs3806653	NIT2	cis	parietal	SCAN
rs3806653	NXPE3	cis	Esophagus Muscularis	GTEx
rs3806653	ZBTB11	cis	cerebellum	SCAN
rs3806653	RP11-49I4.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101393200-101397600	Active TSS	K562	blood
2	chr3:101393800-101397000	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr3:101394000-101397200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr3:101394000-101397400	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr3:101394400-101397000	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr3:101394600-101397000	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr3:101394600-101397000	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr3:101395400-101397000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:101396000-101398800	Weak transcription	Aorta	Aorta
10	chr3:101396000-101398800	Weak transcription	Ovary	ovary
11	chr3:101396000-101399400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:101396200-101397000	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr3:101396200-101397000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:101396200-101397000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr3:101396200-101397000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr3:101396200-101397000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:101396200-101397000	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr3:101396200-101397000	Flanking Active TSS	Fetal Thymus	thymus
19	chr3:101396200-101397000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr3:101396200-101397000	Flanking Active TSS	Rectal Smooth Muscle	rectum
21	chr3:101396200-101397000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr3:101396200-101397200	Flanking Active TSS	NH-A	brain
23	chr3:101396200-101397200	Flanking Active TSS	Osteobl	bone
24	chr3:101396200-101399400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:101396400-101397000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:101396400-101397000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr3:101396400-101397000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:101396400-101397000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr3:101396400-101397000	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr3:101396400-101397000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
31	chr3:101396400-101397000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:101396400-101397000	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr3:101396400-101397000	Flanking Active TSS	Fetal Brain Female	brain
34	chr3:101396400-101397000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr3:101396400-101397000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr3:101396400-101397000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr3:101396400-101397000	Flanking Active TSS	HMEC	breast
38	chr3:101396400-101397200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:101396400-101397200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr3:101396400-101397200	Flanking Active TSS	Liver	Liver
41	chr3:101396400-101397200	Flanking Active TSS	HepG2	liver
42	chr3:101396400-101397200	Flanking Active TSS	NHEK	skin
43	chr3:101396400-101397400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:101396400-101397400	Enhancers	Small Intestine	intestine
45	chr3:101396400-101397400	Transcr. at gene 5' and 3'	Dnd41	blood
46	chr3:101396400-101397400	Flanking Active TSS	Hela-S3	cervix
47	chr3:101396400-101399400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr3:101396400-101401200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr3:101396400-101402800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr3:101396600-101397000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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