The 2.0 version of rSNPBase

Variant report

Variant rs3807540
Chromosome Location chr7:22167630-22167631
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:22149800-22177600 Weak transcription H1 Cell Line embryonic stem cell
2 chr7:22150000-22177800 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr7:22150200-22173200 Weak transcription HUES64 Cell Line embryonic stem cell
4 chr7:22153000-22193000 Strong transcription Dnd41 blood
5 chr7:22154400-22169800 Weak transcription Fetal Muscle Trunk muscle
6 chr7:22155600-22178200 Weak transcription H9 Cell Line embryonic stem cell
7 chr7:22156000-22181000 Weak transcription Gastric stomach
8 chr7:22156000-22186600 Weak transcription Brain Germinal Matrix brain
9 chr7:22156800-22186400 Strong transcription Liver Liver
10 chr7:22157800-22174600 Weak transcription Colonic Mucosa Colon
11 chr7:22159800-22172400 Weak transcription Fetal Stomach stomach
12 chr7:22159800-22175800 Weak transcription HSMMtube muscle
13 chr7:22159800-22214000 Weak transcription Small Intestine intestine
14 chr7:22160000-22173600 Strong transcription HepG2 liver
15 chr7:22160400-22183000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr7:22161200-22168600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr7:22161200-22169000 Enhancers HUVEC blood vessel
18 chr7:22161600-22169600 Weak transcription Aorta Aorta
19 chr7:22162000-22174800 Weak transcription iPS-20b Cell Line embryonic stem cell
20 chr7:22162200-22181400 Weak transcription Primary T cells from cord blood blood
21 chr7:22162200-22186600 Weak transcription GM12878-XiMat blood
22 chr7:22162200-22198000 Weak transcription Rectal Smooth Muscle rectum
23 chr7:22162400-22177800 Weak transcription Fetal Muscle Leg muscle
24 chr7:22163000-22169400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr7:22163000-22179000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr7:22163000-22187800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr7:22163000-22190600 Strong transcription Fetal Thymus thymus
28 chr7:22163200-22169200 Weak transcription HUES6 Cell Line embryonic stem cell
29 chr7:22163200-22169400 Weak transcription Spleen Spleen
30 chr7:22163200-22169600 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr7:22163200-22178800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr7:22163200-22181000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
33 chr7:22163200-22186800 Weak transcription Right Atrium heart
34 chr7:22163600-22167800 Weak transcription K562 blood
35 chr7:22163600-22179000 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr7:22164200-22169000 Strong transcription Brain Inferior Temporal Lobe brain
37 chr7:22164200-22173800 Strong transcription Duodenum Mucosa Duodenum
38 chr7:22164800-22170400 Strong transcription Fetal Intestine Large intestine
39 chr7:22165000-22174200 Weak transcription Psoas Muscle Psoas
40 chr7:22165200-22168000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr7:22165200-22169400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr7:22165400-22168600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr7:22165400-22168800 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr7:22165400-22169400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr7:22165400-22169600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr7:22165400-22171800 Weak transcription Brain Angular Gyrus brain
47 chr7:22165400-22183400 Weak transcription Primary B cells from cord blood blood
48 chr7:22166000-22168600 Weak transcription Brain Substantia Nigra brain
49 chr7:22166000-22172200 Weak transcription Esophagus oesophagus
50 chr7:22166200-22168000 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015