Variant report

Variant	rs73075394
Chromosome Location	chr7:22332653-22332654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22331679..22334167-chr7:22340160..22341894,2	K562	blood:
2	chr7:22331162..22333148-chr7:22341179..22343124,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10247781	1.00[AMR][1000 genomes]
rs3807540	1.00[AMR][1000 genomes]
rs73069127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
2	chr7:22310000-22335600	Weak transcription	Pancreas	Pancrea
3	chr7:22310000-22343400	Weak transcription	Spleen	Spleen
4	chr7:22318800-22340200	Weak transcription	Stomach Mucosa	stomach
5	chr7:22319000-22336000	Weak transcription	Lung	lung
6	chr7:22320800-22345400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:22321000-22341600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:22321000-22346800	Weak transcription	NHEK	skin
9	chr7:22324600-22333200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:22326800-22357000	Strong transcription	HepG2	liver
11	chr7:22327000-22334400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr7:22327400-22345400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:22327600-22359600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:22327800-22350400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:22329200-22334800	Strong transcription	Liver	Liver
16	chr7:22329600-22333000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:22329600-22347000	Weak transcription	Colonic Mucosa	Colon
18	chr7:22329800-22345400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:22329800-22346200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:22330000-22345200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:22330000-22345200	Weak transcription	Primary B cells from cord blood	blood
22	chr7:22330000-22347000	Weak transcription	GM12878-XiMat	blood
23	chr7:22330200-22333200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr7:22330200-22334000	Weak transcription	Fetal Stomach	stomach
25	chr7:22330600-22334400	Enhancers	Brain Angular Gyrus	brain
26	chr7:22330800-22333200	Weak transcription	Fetal Intestine Large	intestine
27	chr7:22330800-22333800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:22330800-22345400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:22331000-22333000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr7:22331000-22334000	Enhancers	Brain Cingulate Gyrus	brain
31	chr7:22331000-22336600	Enhancers	Brain Hippocampus Middle	brain
32	chr7:22331200-22332800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:22331400-22332800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:22331400-22332800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:22331400-22359600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:22331600-22333000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr7:22331600-22333200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:22331600-22333200	Enhancers	Thymus	Thymus
39	chr7:22331600-22333600	Enhancers	Fetal Thymus	thymus
40	chr7:22331600-22334400	Enhancers	Brain Anterior Caudate	brain
41	chr7:22331600-22334400	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr7:22331600-22334400	Enhancers	Brain Substantia Nigra	brain
43	chr7:22331600-22334400	Strong transcription	Fetal Intestine Small	intestine
44	chr7:22331800-22332800	Enhancers	Fetal Kidney	kidney
45	chr7:22331800-22333400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:22332000-22332800	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr7:22332000-22332800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:22332400-22333200	Flanking Active TSS	Dnd41	blood
49	chr7:22332600-22333200	Enhancers	Primary T cells fromperipheralblood	blood
50	chr7:22332600-22334400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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