Variant report

Variant	rs3808021
Chromosome Location	chr7:103311519-103311520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103305325..103307446-chr7:103308405..103311533,3	K562	blood:
2	chr7:103309641..103312329-chr7:103801017..103803175,2	K562	blood:
3	chr7:103304565..103307754-chr7:103310017..103312490,3	MCF-7	breast:
4	chr7:103297764..103300699-chr7:103309943..103311774,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1012064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1012065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261317	1.00[JPT][hapmap]
rs10487161	1.00[JPT][hapmap]
rs10487166	0.84[JPT][hapmap]
rs10953389	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs1122672	1.00[JPT][hapmap]
rs12666897	0.84[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12671936	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12672672	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12674323	1.00[JPT][hapmap]
rs12705140	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs12705141	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs12705148	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs12705149	0.84[JPT][hapmap]
rs12705150	0.84[JPT][hapmap]
rs13238300	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17154114	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1860686	0.82[AFR][1000 genomes]
rs2017179	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2191707	1.00[JPT][hapmap]
rs2215537	1.00[JPT][hapmap]
rs2240965	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299358	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362691	0.85[JPT][hapmap]
rs67423770	0.81[AFR][1000 genomes]
rs977638	1.00[JPT][hapmap]
rs977639	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv933440	chr7:103301959-103312307	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv933934	chr7:103301959-103322483	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103305000-103313400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links