Variant report

Variant	rs17154114
Chromosome Location	chr7:103307425-103307426
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103299093..103302989-chr7:103306962..103309461,4	K562	blood:
2	chr7:103305325..103307446-chr7:103308405..103311533,3	K562	blood:
3	chr7:103304565..103307754-chr7:103310017..103312490,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1012063	0.98[AFR][1000 genomes]
rs1012064	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1012065	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10241716	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs10258991	0.99[AFR][1000 genomes]
rs10261317	0.88[JPT][hapmap]
rs10487161	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10953389	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1122672	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12666897	0.87[JPT][hapmap]
rs12668066	0.81[ASN][1000 genomes]
rs12671085	0.98[AFR][1000 genomes]
rs12671105	0.99[AFR][1000 genomes]
rs12671936	0.95[ASN][1000 genomes]
rs12672672	0.95[ASN][1000 genomes]
rs12674323	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs12705140	0.87[JPT][hapmap]
rs12705141	0.88[JPT][hapmap]
rs12705148	0.87[JPT][hapmap]
rs12705149	0.86[JPT][hapmap]
rs12705150	0.87[JPT][hapmap]
rs13238300	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2017179	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2191707	0.88[JPT][hapmap]
rs2215537	0.88[JPT][hapmap]
rs2240965	0.93[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299358	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3025967	0.81[ASN][1000 genomes]
rs3808021	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs977638	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs977639	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv933440	chr7:103301959-103312307	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv933934	chr7:103301959-103322483	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103305000-103313400	Weak transcription	HepG2	liver
2	chr7:103306600-103307800	Enhancers	Hela-S3	cervix

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