Variant report

Variant	rs3808396
Chromosome Location	chr8:105350763-105350764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11986546	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997590	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458413	0.89[YRI][hapmap]
rs2458414	0.80[YRI][hapmap]
rs2458426	0.93[ASN][1000 genomes]
rs2514663	0.93[ASN][1000 genomes]
rs4734780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696724	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73696725	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7815513	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105343200-105354400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:105347400-105351000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:105348000-105351800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:105349000-105352000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:105349000-105352600	Enhancers	Osteobl	bone
6	chr8:105349400-105351200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:105349400-105352400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:105349400-105358800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:105349600-105350800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:105349600-105351000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:105349600-105351600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:105349600-105358200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:105349800-105350800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:105349800-105350800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr8:105349800-105350800	Weak transcription	NHDF-Ad	bronchial
16	chr8:105349800-105351000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:105349800-105351000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:105349800-105351000	Weak transcription	HMEC	breast
19	chr8:105349800-105351200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:105349800-105352400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr8:105349800-105352600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:105350000-105351000	Weak transcription	NH-A	brain
23	chr8:105350200-105351000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:105350400-105352600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:105350600-105352200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr8:105350600-105352600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr8:105350600-105352600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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