Variant report

Variant	rs4734780
Chromosome Location	chr8:105368408-105368409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11986546	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997590	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458413	1.00[YRI][hapmap]
rs2458414	0.90[YRI][hapmap]
rs2458426	0.93[ASN][1000 genomes]
rs2514663	0.93[ASN][1000 genomes]
rs3808396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696724	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73696725	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7815513	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105361600-105368600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:105364800-105373400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:105365200-105371800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:105365200-105373600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:105366000-105369600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:105366200-105371600	Weak transcription	NH-A	brain
7	chr8:105366400-105371800	Weak transcription	Osteobl	bone
8	chr8:105366400-105372200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:105366400-105378200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:105366600-105370800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:105368000-105368600	Enhancers	Brain Substantia Nigra	brain
12	chr8:105368000-105369800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:105368200-105368600	Enhancers	Brain Anterior Caudate	brain
14	chr8:105368200-105368600	Enhancers	Brain Cingulate Gyrus	brain
15	chr8:105368200-105369000	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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