Variant report

Variant	rs3809362
Chromosome Location	chr13:97874155-97874156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr13:97873928-97877516	MCF10A-Er-Src	breast:	n/a	chr13:97877369-97877378 chr13:97875741-97875751
2	EBF1	chr13:97874036-97874791	GM12878	blood:	n/a	n/a
3	RCOR1	chr13:97873938-97874870	K562	blood:	n/a	n/a
4	POLR2A	chr13:97874099-97875012	U87	brain:	n/a	n/a
5	POLR2A	chr13:97873815-97875009	GM12891	blood:	n/a	n/a
6	POLR2A	chr13:97874122-97878224	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr13:97873954-97880297	PBDE	blood:	n/a	n/a
8	POLR2A	chr13:97874056-97874987	HepG2	liver:	n/a	n/a
9	POLR2A	chr13:97873610-97878134	MCF10A-Er-Src	breast:	n/a	n/a
10	REST	chr13:97874049-97875044	H1-neurons	neurons:	n/a	n/a
11	POLR2A	chr13:97873980-97874824	GM19099	blood:	n/a	n/a
12	POLR2A	chr13:97874030-97875021	U87	brain:	n/a	n/a
13	RFX5	chr13:97873256-97877479	SK-N-SH	brain:	n/a	chr13:97877369-97877378 chr13:97877368-97877383 chr13:97875204-97875212 chr13:97877368-97877383 chr13:97877366-97877380
14	MYC	chr13:97873798-97877521	MCF10A-Er-Src	breast:	n/a	chr13:97877369-97877378 chr13:97875741-97875751
15	ELK4	chr13:97873963-97874836	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr13:97873516-97878969	PANC-1	pancreas:	n/a	n/a
17	POLR2A	chr13:97873840-97878562	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr13:97874137-97875084	SK-N-SH	brain:	n/a	n/a
19	POLR2A	chr13:97874101-97874965	H1-neurons	neurons:	n/a	n/a
20	YY1	chr13:97874137-97874878	SK-N-SH_RA	brain:	n/a	n/a
21	EP300	chr13:97874081-97874800	K562	blood:	n/a	chr13:97874403-97874412
22	MXI1	chr13:97873284-97878459	SK-N-SH	brain:	n/a	chr13:97877369-97877384 chr13:97877838-97877847
23	POLR2A	chr13:97873802-97874989	HUVEC	blood vessel:	n/a	n/a
24	MBD4	chr13:97874138-97875014	HepG2	liver:	n/a	n/a
25	STAT3	chr13:97873927-97875431	MCF10A-Er-Src	breast:	n/a	chr13:97874402-97874410 chr13:97874108-97874115
26	RFX5	chr13:97873965-97875133	IMR90	lung:	n/a	n/a
27	POLR2A	chr13:97873942-97875030	PANC-1	pancreas:	n/a	n/a
28	TCF12	chr13:97873710-97875076	SK-N-SH	brain:	n/a	n/a
29	REST	chr13:97873871-97875228	H1-neurons	neurons:	n/a	n/a
30	FOS	chr13:97873901-97874987	MCF10A-Er-Src	breast:	n/a	n/a
31	TAF1	chr13:97874152-97875055	H1-neurons	neurons:	n/a	n/a
32	NFYA	chr13:97874060-97874780	Hela-S3	cervix:	n/a	chr13:97874511-97874529
33	HEY1	chr13:97874098-97875005	HepG2	liver:	n/a	n/a
34	ZNF384	chr13:97873955-97874250	K562	blood:	n/a	n/a
35	SP1	chr13:97874119-97874843	A549	lung:	n/a	n/a
36	CUX1	chr13:97873882-97874862	K562	blood:	n/a	n/a
37	POLR2A	chr13:97873788-97878797	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
MBNL2	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1318048	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3809360	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7333560	1.00[JPT][hapmap]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97864800-97874200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr13:97865600-97874200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr13:97867600-97874200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr13:97867800-97874200	Weak transcription	Fetal Thymus	thymus
5	chr13:97868200-97874200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr13:97868800-97874200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:97871800-97874200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:97871800-97874200	Weak transcription	Psoas Muscle	Psoas
9	chr13:97872000-97874200	Weak transcription	Fetal Intestine Small	intestine
10	chr13:97873400-97877600	Active TSS	Brain Angular Gyrus	brain
11	chr13:97873600-97874200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr13:97873600-97874200	Enhancers	Liver	Liver
13	chr13:97873600-97874400	Flanking Active TSS	HMEC	breast
14	chr13:97873800-97874200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr13:97873800-97874200	Enhancers	Primary hematopoietic stem cells	blood
16	chr13:97873800-97874200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr13:97873800-97874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr13:97873800-97874200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr13:97873800-97874200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:97873800-97874200	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr13:97873800-97874200	Flanking Active TSS	Brain Substantia Nigra	brain
22	chr13:97873800-97874200	Flanking Active TSS	Fetal Brain Female	brain
23	chr13:97873800-97874200	Enhancers	Fetal Stomach	stomach
24	chr13:97873800-97874200	Enhancers	Dnd41	blood
25	chr13:97873800-97874200	Flanking Active TSS	HepG2	liver
26	chr13:97873800-97874200	Enhancers	HSMMtube	muscle
27	chr13:97873800-97874200	Enhancers	Osteobl	bone
28	chr13:97873800-97874400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:97873800-97874400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr13:97873800-97874400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr13:97873800-97874400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:97873800-97874400	Flanking Active TSS	Colon Smooth Muscle	Colon
33	chr13:97873800-97874400	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr13:97873800-97874400	Active TSS	Fetal Brain Male	brain
35	chr13:97873800-97874400	Enhancers	Fetal Heart	heart
36	chr13:97873800-97874400	Flanking Active TSS	Fetal Kidney	kidney
37	chr13:97873800-97874400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr13:97873800-97874400	Flanking Active TSS	HUVEC	blood vessel
39	chr13:97873800-97874400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr13:97873800-97874400	Flanking Active TSS	NHEK	skin
41	chr13:97873800-97877000	Active TSS	A549	lung
42	chr13:97873800-97877600	Active TSS	Stomach Smooth Muscle	stomach
43	chr13:97873800-97877800	Active TSS	Brain Cingulate Gyrus	brain
44	chr13:97873800-97878000	Active TSS	Brain Hippocampus Middle	brain
45	chr13:97873800-97878400	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr13:97873800-97878400	Active TSS	Rectal Smooth Muscle	rectum
47	chr13:97873800-97879000	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr13:97874000-97874200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr13:97874000-97874200	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr13:97874000-97874200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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