The 2.0 version of rSNPBase

Variant report

Variant rs3809360
Chromosome Location chr13:97873019-97873020
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:97864600-97873800 Weak transcription Duodenum Mucosa Duodenum
2 chr13:97864800-97874200 Weak transcription Placenta Amnion Placenta Amnion
3 chr13:97865600-97874200 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr13:97867600-97874200 Weak transcription Primary T cells fromperipheralblood blood
5 chr13:97867800-97874200 Weak transcription Fetal Thymus thymus
6 chr13:97868000-97873800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr13:97868200-97874000 Weak transcription GM12878-XiMat blood
8 chr13:97868200-97874200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr13:97868400-97873600 Weak transcription Primary T helper cells fromperipheralblood blood
10 chr13:97868400-97873800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr13:97868400-97873800 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr13:97868400-97873800 Weak transcription Dnd41 blood
13 chr13:97868600-97873800 Weak transcription Primary T helper cells PMA-I stimulated --
14 chr13:97868600-97874000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr13:97868600-97874000 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr13:97868600-97874000 Weak transcription Primary T killer memory cells from peripheral blood blood
17 chr13:97868800-97873800 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr13:97868800-97874000 Weak transcription Primary T cells from cord blood blood
19 chr13:97868800-97874200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr13:97871000-97873400 Enhancers Brain Cingulate Gyrus brain
21 chr13:97871000-97873800 Enhancers Brain Substantia Nigra brain
22 chr13:97871400-97873800 Enhancers Brain Inferior Temporal Lobe brain
23 chr13:97871400-97874000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
24 chr13:97871800-97874200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr13:97871800-97874200 Weak transcription Psoas Muscle Psoas
26 chr13:97872000-97873800 Enhancers HepG2 liver
27 chr13:97872000-97874000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr13:97872000-97874200 Weak transcription Fetal Intestine Small intestine
29 chr13:97872200-97873200 Enhancers Stomach Mucosa stomach
30 chr13:97872200-97873400 Weak transcription Brain Angular Gyrus brain
31 chr13:97872400-97873200 Enhancers Brain Anterior Caudate brain
32 chr13:97872400-97873600 Enhancers HMEC breast
33 chr13:97872400-97873800 Enhancers NHEK skin
34 chr13:97872400-97874000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr13:97872600-97873600 Enhancers Breast Myoepithelial Primary Cells Breast
36 chr13:97872600-97873800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr13:97872800-97873600 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr13:97872800-97873800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
39 chr13:97873000-97873200 Enhancers Liver Liver
40 chr13:97873000-97873800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr13:97873000-97873800 Weak transcription Brain Hippocampus Middle brain
42 chr13:97873000-97873800 Enhancers Fetal Kidney kidney
43 chr13:97873000-97873800 Weak transcription Small Intestine intestine
44 chr13:97873000-97873800 Weak transcription K562 blood

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Last update: Aug 31, 2015