Variant report

Variant	rs7990980
Chromosome Location	chr13:97826202-97826203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1318048	0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs3809360	0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs3809362	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs4287425	1.00[ASN][1000 genomes]
rs58613320	0.97[ASN][1000 genomes]
rs7333560	1.00[CHD][hapmap];0.88[JPT][hapmap]
rs947453	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97816200-97830600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:97824800-97830800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:97826200-97827000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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