Variant report

Variant	rs3809535
Chromosome Location	chr15:58359787-58359788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:58359760-58359910	AG09319	gingival:	n/a	n/a
2	ZNF263	chr15:58359676-58360068	HEK293-T-REx	kidney:	n/a	n/a

Variant related genes	Relation type
ALDH1A2	TF binding region

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10518961	0.90[ASN][1000 genomes]
rs11071363	0.89[ASN][1000 genomes]
rs11071364	0.89[ASN][1000 genomes]
rs11071367	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11629583	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11631127	0.82[ASN][1000 genomes]
rs11636979	0.85[ASN][1000 genomes]
rs11857465	0.87[ASN][1000 genomes]
rs12148281	0.86[ASN][1000 genomes]
rs12324197	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12594082	0.81[ASN][1000 genomes]
rs12595180	0.89[ASN][1000 genomes]
rs12595410	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12898976	0.84[ASN][1000 genomes]
rs12903724	0.86[ASN][1000 genomes]
rs12905608	0.86[ASN][1000 genomes]
rs12907125	0.86[ASN][1000 genomes]
rs12909423	0.87[ASN][1000 genomes]
rs12909865	0.87[ASN][1000 genomes]
rs12911450	0.87[ASN][1000 genomes]
rs12912093	0.89[ASN][1000 genomes]
rs12914388	0.85[ASN][1000 genomes]
rs12914414	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12914455	0.86[ASN][1000 genomes]
rs12914603	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12915508	0.85[ASN][1000 genomes]
rs12915821	0.86[ASN][1000 genomes]
rs12915989	0.86[ASN][1000 genomes]
rs12917536	0.86[ASN][1000 genomes]
rs1372369	0.87[ASN][1000 genomes]
rs1441815	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1441829	0.85[ASN][1000 genomes]
rs17820966	0.87[ASN][1000 genomes]
rs17820990	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1822205	0.86[ASN][1000 genomes]
rs1837851	0.81[ASN][1000 genomes]
rs1899355	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1994926	0.90[ASN][1000 genomes]
rs1994927	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2044071	0.82[ASN][1000 genomes]
rs2067062	0.88[ASN][1000 genomes]
rs2414529	0.87[ASN][1000 genomes]
rs2414530	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2642630	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2642632	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2642635	0.82[EUR][1000 genomes]
rs2704196	0.87[ASN][1000 genomes]
rs2704197	0.85[ASN][1000 genomes]
rs2704218	0.82[ASN][1000 genomes]
rs2704225	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2899611	0.87[ASN][1000 genomes]
rs2899612	0.90[ASN][1000 genomes]
rs2899613	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs33960206	0.86[ASN][1000 genomes]
rs34226780	0.87[ASN][1000 genomes]
rs34556514	0.89[ASN][1000 genomes]
rs34676542	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34958088	0.87[ASN][1000 genomes]
rs4144005	0.87[ASN][1000 genomes]
rs4238327	0.90[ASN][1000 genomes]
rs4553566	0.90[ASN][1000 genomes]
rs4646549	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4646554	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4646555	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4646557	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646559	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4646560	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4646564	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4646566	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4646570	0.90[ASN][1000 genomes]
rs4646579	0.89[ASN][1000 genomes]
rs4646580	0.89[ASN][1000 genomes]
rs4646581	0.86[ASN][1000 genomes]
rs4646582	0.86[ASN][1000 genomes]
rs4646584	0.85[ASN][1000 genomes]
rs4646588	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4646589	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4646590	0.87[ASN][1000 genomes]
rs4646592	0.87[ASN][1000 genomes]
rs4646594	0.87[ASN][1000 genomes]
rs4646595	0.87[ASN][1000 genomes]
rs4646596	0.86[ASN][1000 genomes]
rs4646597	0.86[ASN][1000 genomes]
rs4646598	0.86[ASN][1000 genomes]
rs4646600	0.86[ASN][1000 genomes]
rs4646602	0.87[ASN][1000 genomes]
rs4646603	0.87[ASN][1000 genomes]
rs4646605	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4646606	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4646607	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4646609	0.84[ASN][1000 genomes]
rs57975858	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493977	0.87[ASN][1000 genomes]
rs6493978	0.87[ASN][1000 genomes]
rs6493979	0.89[ASN][1000 genomes]
rs6493980	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6493981	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs66971399	0.87[ASN][1000 genomes]
rs7171261	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7171714	0.87[ASN][1000 genomes]
rs7178598	0.86[ASN][1000 genomes]
rs7180059	0.86[ASN][1000 genomes]
rs8023769	0.90[ASN][1000 genomes]
rs8026952	0.86[ASN][1000 genomes]
rs8027188	0.90[ASN][1000 genomes]
rs8027964	0.90[ASN][1000 genomes]
rs8032572	0.85[ASN][1000 genomes]
rs8041644	0.81[EUR][1000 genomes]
rs9635346	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9635350	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569596	chr15:58355798-58408763	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58359000-58362800	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links