Variant report

Variant	rs3814735
Chromosome Location	chr11:66313693-66313694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:351)
CpG islands
(count:122)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:351 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:66313077-66313893	ECC-1	luminal epithelium:	n/a	chr11:66313616-66313625
2	FOXA1	chr11:66313380-66313785	T-47D	breast:	n/a	n/a
3	MYC	chr11:66313083-66313815	A549	lung:	n/a	chr11:66313616-66313625
4	FOS	chr11:66313384-66313798	K562	blood:	n/a	n/a
5	MYC	chr11:66313222-66313911	NB4	blood:	n/a	chr11:66313616-66313625
6	POLR2A	chr11:66313263-66313943	GM10847	blood:	n/a	n/a
7	SP2	chr11:66313326-66313810	H1-hESC	embryonic stem cell:	n/a	chr11:66313559-66313569 chr11:66313573-66313588 chr11:66313542-66313565
8	POLR2A	chr11:66313236-66313880	A549	lung:	n/a	n/a
9	ETS1	chr11:66313124-66313868	K562	blood:	n/a	chr11:66313749-66313760
10	POLR2A	chr11:66313041-66314021	K562	blood:	n/a	n/a
11	RFX5	chr11:66313331-66313978	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr11:66313073-66314041	GM12892	blood:	n/a	n/a
13	SIN3A	chr11:66312892-66314105	GM12878	blood:	n/a	chr11:66313845-66313856
14	MAZ	chr11:66313304-66314148	K562	blood:	n/a	chr11:66313616-66313625
15	ETS1	chr11:66313412-66313836	A549	lung:	n/a	chr11:66313749-66313760
16	POLR2A	chr11:66313253-66313933	NB4	blood:	n/a	n/a
17	RCOR1	chr11:66313412-66314319	K562	blood:	n/a	n/a
18	SIN3AK20	chr11:66313276-66313703	PANC-1	pancreas:	n/a	n/a
19	TAF1	chr11:66313266-66314012	H1-hESC	embryonic stem cell:	n/a	n/a
20	SIN3AK20	chr11:66312860-66314159	MCF-7	breast:	n/a	n/a
21	PBX3	chr11:66313250-66313849	A549	lung:	n/a	chr11:66313544-66313564
22	PAX5	chr11:66313188-66313809	GM12892	blood:	n/a	n/a
23	MYC	chr11:66313131-66313732	MCF-7	breast:	n/a	chr11:66313616-66313625
24	POLR2A	chr11:66313270-66314103	GM12878	blood:	n/a	n/a
25	MAX	chr11:66313370-66313755	K562	blood:	n/a	chr11:66313616-66313625
26	POLR2A	chr11:66313083-66314270	HUVEC	blood vessel:	n/a	n/a
27	GABPA	chr11:66313176-66313880	K562	blood:	n/a	chr11:66313749-66313758
28	RUNX3	chr11:66313316-66314084	GM12878	blood:	n/a	n/a
29	NFYB	chr11:66313397-66313874	GM12878	blood:	n/a	n/a
30	HCFC1	chr11:66313307-66314057	K562	blood:	n/a	n/a
31	POLR2A	chr11:66313241-66313848	PBDE	blood:	n/a	n/a
32	ELF1	chr11:66313164-66313967	HCT-116	colon:	n/a	chr11:66313512-66313525
33	ELF1	chr11:66313097-66314026	SK-N-SH	brain:	n/a	chr11:66313512-66313525
34	POLR2A	chr11:66312742-66314049	MCF10A-Er-Src	breast:	n/a	n/a
35	PML	chr11:66313229-66313713	K562	blood:	n/a	n/a
36	HEY1	chr11:66313262-66313935	HepG2	liver:	n/a	chr11:66313674-66313689 chr11:66313754-66313769
37	POLR2A	chr11:66313208-66313934	U87	brain:	n/a	n/a
38	POLR2A	chr11:66313138-66313729	HepG2	liver:	n/a	n/a
39	YY1	chr11:66313240-66313852	SK-N-SH_RA	brain:	n/a	chr11:66313613-66313627
40	NFYA	chr11:66313399-66313798	K562	blood:	n/a	n/a
41	CEBPD	chr11:66313313-66313843	HepG2	liver:	n/a	n/a
42	ELF1	chr11:66313328-66313812	A549	lung:	n/a	chr11:66313512-66313525
43	POLR2A	chr11:66313108-66314021	U87	brain:	n/a	n/a
44	MAZ	chr11:66312969-66314341	GM12878	blood:	n/a	chr11:66313616-66313625 chr11:66314288-66314298
45	POLR2A	chr11:66313080-66313927	K562	blood:	n/a	n/a
46	GABPA	chr11:66313289-66313725	A549	lung:	n/a	n/a
47	TEAD4	chr11:66313130-66313883	K562	blood:	n/a	n/a
48	NFIC	chr11:66313122-66314196	GM12878	blood:	n/a	n/a
49	MAX	chr11:66313013-66314286	K562	blood:	n/a	chr11:66313616-66313625
50	ZBTB33	chr11:66313327-66313789	HCT-116	colon:	n/a	chr11:66313760-66313770

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:66313673-66313723	T-47D	breast:	n/a
2	chr11:66313678-66313728	GM12891	blood:	n/a
3	chr11:66313673-66313723	BJ	skin:	n/a
4	chr11:66313673-66313723	SKMC	muscle:	n/a
5	chr11:66313673-66313723	NB4	blood:	n/a
6	chr11:66313678-66313728	HIPEpiC	eye:	n/a
7	chr11:66313678-66313728	A549	lung:	n/a
8	chr11:66313673-66313723	HNPCEpiC	eye:	n/a
9	chr11:66313673-66313723	GM06990	blood:	n/a
10	chr11:66313678-66313728	GM12878	blood:	n/a
11	chr11:66313673-66313723	ovcar-3	ovarian:	n/a
12	chr11:66313678-66313728	AG04449	skin:	fetal
13	chr11:66313678-66313728	NT2-D1	testis:	n/a
14	chr11:66313673-66313723	SAEC	small airway:	n/a
15	chr11:66313673-66313723	HEK293	kidney:	embryo
16	chr11:66313678-66313728	HEK293	kidney:	embryo
17	chr11:66313678-66313728	SK-N-SH_RA	brain:	n/a
18	chr11:66313678-66313728	AG09309	skin:	n/a
19	chr11:66313678-66313728	HRPEpiC	eye:	n/a
20	chr11:66313673-66313723	GM12891	blood:	n/a
21	chr11:66313673-66313723	U87	brain:	n/a
22	chr11:66313673-66313723	NT2-D1	testis:	n/a
23	chr11:66313673-66313723	GM19239	blood:	n/a
24	chr11:66313673-66313723	HIPEpiC	eye:	n/a
25	chr11:66313678-66313728	HNPCEpiC	eye:	n/a
26	chr11:66313678-66313728	BE2_C	brain:	n/a
27	chr11:66313678-66313728	HEEpiC	esophagus:	n/a
28	chr11:66313673-66313723	Caco-2	colon:	n/a
29	chr11:66313673-66313723	SK-N-MC	brain:	n/a
30	chr11:66313673-66313723	HRCEpiC	kidney:	n/a
31	chr11:66313678-66313728	U87	brain:	n/a
32	chr11:66313673-66313723	LNCaP	prostate:	n/a
33	chr11:66313678-66313728	SAEC	small airway:	n/a
34	chr11:66313678-66313728	HPAEpiC	pulmonary alveolar:	n/a
35	chr11:66313673-66313723	A549	lung:	n/a
36	chr11:66313673-66313723	K562	blood:	n/a
37	chr11:66313678-66313728	CMK	blood:	n/a
38	chr11:66313678-66313728	MCF10A-Er-Src	breast:	n/a
39	chr11:66313673-66313723	ProgFib	skin:	n/a
40	chr11:66313678-66313728	Caco-2	colon:	n/a
41	chr11:66313678-66313728	AG09319	gingival:	n/a
42	chr11:66313673-66313723	GM12892	blood:	n/a
43	chr11:66313673-66313723	HMEC	breast:	n/a
44	chr11:66313678-66313728	HCPEpiC	choroid plexus:	n/a
45	chr11:66313673-66313723	AG04450	lung:	fetal
46	chr11:66313678-66313728	HUVEC	blood vessel:	n/a
47	chr11:66313678-66313728	HepG2	liver:	n/a
48	chr11:66313673-66313723	Jurkat	blood:	n/a
49	chr11:66313673-66313723	ECC-1	luminal epithelium:	n/a
50	chr11:66313678-66313728	H1-hESC	embryonic stem cell:	embryo

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66290583..66293283-chr11:66311387..66313963,2	MCF-7	breast:
2	chr11:66313061..66314703-chr11:66495629..66497845,2	K562	blood:
3	chr11:66312205..66315427-chr11:66405180..66408532,5	MCF-7	breast:
4	chr11:66257407..66259570-chr11:66310749..66314431,3	MCF-7	breast:
5	chr11:66312120..66315858-chr11:66382093..66385516,4	K562	blood:
6	chr11:66304927..66310447-chr11:66310654..66314937,8	MCF-7	breast:
7	chr11:66311475..66316022-chr11:66335981..66338223,4	MCF-7	breast:
8	chr11:66246144..66249538-chr11:66312277..66316497,5	MCF-7	breast:
9	chr11:66233892..66235640-chr11:66313416..66314952,2	K562	blood:
10	chr11:66312923..66315636-chr11:66381243..66385459,4	MCF-7	breast:
11	chr11:66311617..66317579-chr11:66325496..66333927,8	MCF-7	breast:
12	chr11:66246687..66248934-chr11:66312384..66314818,3	MCF-7	breast:
13	chr11:66312879..66315564-chr11:66382748..66385471,3	MCF-7	breast:
14	chr11:66313372..66315858-chr11:66382227..66384523,2	K562	blood:
15	chr11:66313613..66315328-chr11:66445220..66447072,2	MCF-7	breast:
16	chr11:66310423..66314650-chr11:66409018..66412449,5	K562	blood:

No data

Variant related genes	Relation type
ACTN3	TF binding region
ZDHHC24	TF binding region
ACTN3	CpG island
ZDHHC24	CpG island
ENSG00000239306	Chromatin interaction
ENSG00000255517	Chromatin interaction
ENSG00000250105	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000199325	Chromatin interaction
ENSG00000254986	Chromatin interaction
ENSG00000269990	Chromatin interaction
ENSG00000173933	Chromatin interaction
ENSG00000174483	Chromatin interaction
ENSG00000173898	Chromatin interaction
ENSG00000173914	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000174080	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11227481	0.90[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap]
rs11227504	0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11227516	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11227527	0.91[LWK][hapmap];0.88[YRI][hapmap]
rs11227532	0.90[CHB][hapmap];0.83[CHD][hapmap];0.88[ASN][1000 genomes]
rs12222434	0.96[ASN][1000 genomes]
rs12223171	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs2290462	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3782080	0.88[ASN][1000 genomes]
rs3814736	1.00[ASN][1000 genomes]
rs3892817	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4630309	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
2	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv897787	chr11:66300348-66347850	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66312400-66313800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:66312400-66314000	Active TSS	GM12878-XiMat	blood
3	chr11:66312600-66313800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:66312600-66313800	Active TSS	Colonic Mucosa	Colon
5	chr11:66312600-66314000	Active TSS	A549	lung
6	chr11:66312600-66314200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:66312600-66314200	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr11:66312600-66314200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:66312600-66314200	Active TSS	HSMM	muscle
10	chr11:66312600-66314400	Active TSS	Rectal Mucosa Donor 31	rectum
11	chr11:66312600-66314600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr11:66312600-66314800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr11:66312600-66314800	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr11:66312600-66315000	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr11:66312600-66315000	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr11:66312800-66313800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:66312800-66313800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:66312800-66313800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:66312800-66313800	Active TSS	Lung	lung
20	chr11:66312800-66313800	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr11:66312800-66313800	Active TSS	HSMMtube	muscle
22	chr11:66312800-66314000	Active TSS	Brain Angular Gyrus	brain
23	chr11:66312800-66314000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:66312800-66314200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr11:66312800-66314200	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr11:66312800-66314200	Active TSS	Fetal Kidney	kidney
27	chr11:66312800-66314200	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr11:66312800-66314200	Active TSS	Ovary	ovary
29	chr11:66312800-66314400	Active TSS	Psoas Muscle	Psoas
30	chr11:66312800-66314400	Active TSS	Right Atrium	heart
31	chr11:66312800-66314400	Active TSS	NHLF	lung
32	chr11:66312800-66314600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:66312800-66314800	Active TSS	H1 Cell Line	embryonic stem cell
34	chr11:66312800-66314800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:66312800-66315200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:66312800-66315400	Active TSS	H9 Cell Line	embryonic stem cell
37	chr11:66312800-66316000	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr11:66313000-66313800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:66313000-66313800	Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr11:66313000-66313800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:66313000-66313800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr11:66313000-66313800	Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr11:66313000-66313800	Active TSS	Brain Anterior Caudate	brain
44	chr11:66313000-66313800	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr11:66313000-66313800	Active TSS	Colon Smooth Muscle	Colon
46	chr11:66313000-66313800	Active TSS	Duodenum Mucosa	Duodenum
47	chr11:66313000-66313800	Active TSS	Fetal Intestine Large	intestine
48	chr11:66313000-66313800	Active TSS	Osteobl	bone
49	chr11:66313000-66314000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:66313000-66314000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links