Variant report

Variant	rs11227504
Chromosome Location	chr11:66279261-66279262
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66240065..66243058-chr11:66275897..66279906,3	MCF-7	breast:
2	chr11:66277230..66279524-chr11:66443471..66447477,3	K562	blood:
3	chr11:66276194..66279522-chr11:66281470..66284393,4	MCF-7	breast:
4	chr11:66271226..66274092-chr11:66277706..66279394,2	K562	blood:
5	chr11:66277351..66279482-chr11:66383310..66385762,3	K562	blood:
6	chr11:66275530..66280458-chr11:66280685..66284919,6	K562	blood:
7	chr11:66277334..66280308-chr11:66282116..66284343,2	MCF-7	breast:
8	chr11:66277249..66279573-chr11:66442892..66445928,3	K562	blood:
9	chr11:66234037..66235984-chr11:66277120..66279562,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000239306	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000173914	Chromatin interaction
ENSG00000254986	Chromatin interaction
ENSG00000255517	Chromatin interaction
ENSG00000174483	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11227481	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11227516	0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11227532	0.82[ASN][1000 genomes]
rs12222434	0.90[ASN][1000 genomes]
rs12223171	0.82[ASN][1000 genomes]
rs2290462	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3782080	0.82[ASN][1000 genomes]
rs3814735	0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3814736	0.94[ASN][1000 genomes]
rs3892817	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
2	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv468601	chr11:66234023-66296114	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv555224	chr11:66234023-66296114	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
6	nsv934228	chr11:66277759-66288927	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66278400-66279400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
2	chr11:66278600-66311000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:66278800-66279400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:66278800-66279800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:66278800-66280800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr11:66278800-66281000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:66278800-66281000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:66278800-66281000	Weak transcription	Spleen	Spleen
9	chr11:66278800-66281200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:66278800-66281200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:66278800-66281200	Weak transcription	Esophagus	oesophagus
12	chr11:66278800-66281200	Weak transcription	Lung	lung
13	chr11:66278800-66281400	Weak transcription	Gastric	stomach
14	chr11:66278800-66281400	Weak transcription	Ovary	ovary
15	chr11:66278800-66281800	Weak transcription	Pancreas	Pancrea
16	chr11:66278800-66282000	Weak transcription	Left Ventricle	heart
17	chr11:66278800-66286400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:66278800-66286600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:66278800-66287000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:66278800-66288000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:66278800-66288200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr11:66278800-66288400	Weak transcription	Colonic Mucosa	Colon
23	chr11:66278800-66290400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:66278800-66290600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:66278800-66294000	Weak transcription	Aorta	Aorta
26	chr11:66278800-66309800	Weak transcription	HSMMtube	muscle
27	chr11:66278800-66312800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:66279000-66279400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:66279000-66279400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:66279000-66279400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:66279000-66279400	Enhancers	Colon Smooth Muscle	Colon
32	chr11:66279000-66279400	Enhancers	Fetal Brain Male	brain
33	chr11:66279000-66279400	Enhancers	Right Atrium	heart
34	chr11:66279000-66279600	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr11:66279000-66279600	Weak transcription	HSMM	muscle
36	chr11:66279000-66279800	Weak transcription	Brain Angular Gyrus	brain
37	chr11:66279000-66280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:66279000-66280800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:66279000-66281000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr11:66279000-66281000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:66279000-66281000	Weak transcription	Fetal Intestine Small	intestine
42	chr11:66279000-66281200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:66279000-66281200	Weak transcription	Placenta	Placenta
44	chr11:66279000-66281400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:66279000-66281400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:66279000-66281400	Weak transcription	Thymus	Thymus
47	chr11:66279000-66281600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:66279000-66281600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:66279000-66281600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:66279000-66281600	Weak transcription	NHDF-Ad	bronchial

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