Variant report

Variant	rs38172
Chromosome Location	chr7:15893576-15893577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10226196	0.84[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.81[TSI][hapmap]
rs10486782	0.84[CEU][hapmap];0.90[CHB][hapmap]
rs17169104	0.81[CEU][hapmap]
rs38169	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38170	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38174	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs38177	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs38178	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs38181	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs38183	0.91[ASN][1000 genomes]
rs38184	0.91[ASN][1000 genomes]
rs38185	0.90[ASN][1000 genomes]
rs38187	0.90[ASN][1000 genomes]
rs38199	0.87[ASN][1000 genomes]
rs38200	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15888800-15893800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:15889400-15894400	Weak transcription	Fetal Lung	lung
3	chr7:15892600-15896200	Enhancers	HUVEC	blood vessel
4	chr7:15892800-15893600	Enhancers	Pancreas	Pancrea
5	chr7:15893000-15893600	Enhancers	Adipose Nuclei	Adipose
6	chr7:15893000-15893600	Enhancers	Left Ventricle	heart
7	chr7:15893000-15893600	Enhancers	Right Atrium	heart
8	chr7:15893000-15893800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:15893000-15894000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:15893000-15894000	Enhancers	Osteobl	bone
11	chr7:15893000-15895200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:15893000-15895200	Enhancers	NHDF-Ad	bronchial
13	chr7:15893200-15894000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:15893200-15894000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:15893200-15894200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:15893200-15894600	Weak transcription	Aorta	Aorta
17	chr7:15893400-15893600	Enhancers	Fetal Muscle Leg	muscle
18	chr7:15893400-15894000	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links