Variant report

Variant	rs38199
Chromosome Location	chr7:15910153-15910154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10226196	0.82[CHD][hapmap]
rs28273	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38169	0.87[ASN][1000 genomes]
rs38170	0.87[ASN][1000 genomes]
rs38172	0.87[ASN][1000 genomes]
rs38174	0.87[ASN][1000 genomes]
rs38177	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs38178	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs38181	0.93[ASN][1000 genomes]
rs38183	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs38184	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs38185	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs38186	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs38187	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs38188	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38189	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs38190	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38191	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs38192	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs38193	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs38194	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs38195	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs38196	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs38198	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs38200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38202	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs38209	0.81[AMR][1000 genomes]
rs38222	0.81[AMR][1000 genomes]
rs9639251	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9639252	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9639254	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1017958	chr7:15910153-15956470	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15908600-15912200	Weak transcription	Pancreas	Pancrea
2	chr7:15909800-15910800	Enhancers	Fetal Intestine Large	intestine
3	chr7:15910000-15910800	Enhancers	Fetal Intestine Small	intestine
4	chr7:15910000-15911000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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