Variant report

Variant	rs28273
Chromosome Location	chr7:15901834-15901835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17169104	0.81[JPT][hapmap]
rs38166	0.81[JPT][hapmap]
rs38175	0.99[ASN][1000 genomes]
rs38179	0.97[ASN][1000 genomes]
rs38183	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs38184	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs38185	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs38186	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs38187	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs38188	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs38189	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs38190	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs38191	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38192	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38193	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38194	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38195	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs38196	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs38198	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs38199	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38200	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38202	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9639251	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9639252	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9639254	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15900600-15904000	Enhancers	Fetal Lung	lung
2	chr7:15901200-15902400	Enhancers	Colon Smooth Muscle	Colon
3	chr7:15901200-15902400	Enhancers	Rectal Smooth Muscle	rectum
4	chr7:15901200-15902600	Enhancers	Stomach Smooth Muscle	stomach
5	chr7:15901200-15902800	Enhancers	Fetal Brain Female	brain
6	chr7:15901600-15902600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:15901600-15902800	Enhancers	Osteobl	bone
8	chr7:15901600-15904400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:15901800-15902000	Enhancers	Aorta	Aorta
10	chr7:15901800-15902000	Enhancers	Left Ventricle	heart
11	chr7:15901800-15902200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:15901800-15902400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:15901800-15902400	Enhancers	Ovary	ovary
14	chr7:15901800-15902600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:15901800-15902600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links