Variant report
| Variant | rs38202 |
|---|---|
| Chromosome Location | chr7:15912127-15912128 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs28273 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs38174 | 0.80[ASN][1000 genomes] |
| rs38177 | 0.85[ASN][1000 genomes] |
| rs38178 | 0.85[ASN][1000 genomes] |
| rs38181 | 0.84[ASN][1000 genomes] |
| rs38183 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs38184 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs38185 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs38186 | 0.82[AMR][1000 genomes] |
| rs38187 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs38188 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs38189 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs38190 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs38191 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs38192 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs38193 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs38194 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs38195 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs38196 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs38198 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs38199 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs38200 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs38209 | 0.82[AMR][1000 genomes] |
| rs9639251 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9639252 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9639254 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv523199 | chr7:15582208-16042596 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016642 | chr7:15884061-16799788 | Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 3 | nsv1017958 | chr7:15910153-15956470 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:15908600-15912200 | Weak transcription | Pancreas | Pancrea |
