Variant report

Variant	rs3820364
Chromosome Location	chr1:165373302-165373303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165275539..165276395-chr1:165372901..165373865,2	MCF-7	breast:
2	chr1:165362225..165362834-chr1:165372541..165373410,2	MCF-7	breast:
3	chr1:165372904..165373771-chr1:165883155..165884105,2	K562	blood:
4	chr1:165372861..165373913-chr1:165561845..165562894,14	MCF-7	breast:
5	chr1:165372897..165374942-chr1:165561137..165563189,2	MCF-7	breast:
6	chr1:165372874..165373802-chr1:165561869..165562669,5	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489746	0.94[EUR][1000 genomes]
rs10489748	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1123945	0.89[EUR][1000 genomes]
rs1326369	0.89[EUR][1000 genomes]
rs283696	0.98[ASN][1000 genomes]
rs283697	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs283698	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3767335	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767336	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3820363	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6685620	0.89[EUR][1000 genomes]
rs74121133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121142	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3400219	chr1:165369828-165374126	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165362600-165378200	Weak transcription	Psoas Muscle	Psoas
2	chr1:165362800-165392200	Weak transcription	Brain Anterior Caudate	brain
3	chr1:165363600-165378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:165367800-165378600	Weak transcription	Fetal Lung	lung
5	chr1:165368400-165376400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:165370400-165380800	Strong transcription	Fetal Muscle Trunk	muscle
7	chr1:165370600-165373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:165372000-165373400	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:165372200-165373400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:165372200-165373400	Weak transcription	Lung	lung
11	chr1:165372800-165373600	Enhancers	HepG2	liver
12	chr1:165373000-165373400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr1:165373000-165373400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr1:165373000-165373600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:165373000-165373600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:165373000-165373600	Enhancers	Liver	Liver
17	chr1:165373000-165373600	Enhancers	Duodenum Mucosa	Duodenum
18	chr1:165373000-165373600	Enhancers	Right Ventricle	heart
19	chr1:165373000-165373600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr1:165373200-165373400	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:165373200-165373400	Enhancers	Stomach Mucosa	stomach
22	chr1:165373200-165373600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
23	chr1:165373200-165373600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain

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