Variant report

Variant	rs6685620
Chromosome Location	chr1:165394644-165394645
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10489746	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10489748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12093563	1.00[ASN][1000 genomes]
rs1326369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767335	0.89[EUR][1000 genomes]
rs3767336	0.89[EUR][1000 genomes]
rs3767337	0.89[EUR][1000 genomes]
rs3820363	0.89[EUR][1000 genomes]
rs3820364	0.89[EUR][1000 genomes]
rs6698369	1.00[ASN][1000 genomes]
rs74118604	1.00[ASN][1000 genomes]
rs74121133	0.89[EUR][1000 genomes]
rs74121134	0.89[EUR][1000 genomes]
rs74121136	0.89[EUR][1000 genomes]
rs74121137	0.89[EUR][1000 genomes]
rs74121138	0.89[EUR][1000 genomes]
rs74121140	0.89[EUR][1000 genomes]
rs74121143	0.89[EUR][1000 genomes]
rs74121144	0.89[EUR][1000 genomes]

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:165393200-165395200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:165393400-165394800	Flanking Active TSS	Fetal Lung	lung
4	chr1:165393600-165395000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:165393800-165394800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr1:165393800-165395400	Enhancers	Left Ventricle	heart
7	chr1:165394000-165395000	Enhancers	Right Ventricle	heart
8	chr1:165394000-165395200	Enhancers	Fetal Muscle Leg	muscle
9	chr1:165394000-165395200	Enhancers	Lung	lung
10	chr1:165394000-165395600	Enhancers	HepG2	liver
11	chr1:165394000-165400600	Weak transcription	Fetal Brain Male	brain
12	chr1:165394200-165394800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr1:165394200-165394800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr1:165394200-165394800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr1:165394200-165394800	Enhancers	Liver	Liver
16	chr1:165394200-165394800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr1:165394200-165395000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr1:165394200-165395000	Enhancers	Brain Hippocampus Middle	brain
19	chr1:165394200-165395000	Enhancers	Brain Substantia Nigra	brain
20	chr1:165394200-165395000	Enhancers	Right Atrium	heart
21	chr1:165394200-165396600	Enhancers	Psoas Muscle	Psoas
22	chr1:165394400-165394800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:165394400-165394800	Enhancers	Duodenum Mucosa	Duodenum
24	chr1:165394400-165394800	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr1:165394400-165394800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr1:165394400-165395000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr1:165394400-165395000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr1:165394400-165395200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr1:165394400-165395200	Weak transcription	Fetal Intestine Small	intestine
30	chr1:165394400-165395200	Enhancers	Stomach Smooth Muscle	stomach
31	chr1:165394400-165395400	Enhancers	Ovary	ovary
32	chr1:165394400-165395600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:165394400-165395600	Weak transcription	Small Intestine	intestine
34	chr1:165394400-165396400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:165394400-165402800	Weak transcription	Brain Anterior Caudate	brain
36	chr1:165394400-165405800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr1:165394600-165394800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr1:165394600-165395400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:165394600-165395600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links