Variant report

Variant	rs6698369
Chromosome Location	chr1:165394852-165394853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr1:165394676-165394935	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RXRG	TF binding region

rs_ID	r²[population]
rs10489748	1.00[ASN][1000 genomes]
rs1123945	1.00[ASN][1000 genomes]
rs1160360	0.86[AMR][1000 genomes]
rs12093563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326369	1.00[ASN][1000 genomes]
rs17470525	0.93[AMR][1000 genomes]
rs17471319	0.86[AMR][1000 genomes]
rs6685620	1.00[ASN][1000 genomes]
rs74118604	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:165393200-165395200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:165393600-165395000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:165393800-165395400	Enhancers	Left Ventricle	heart
5	chr1:165394000-165395000	Enhancers	Right Ventricle	heart
6	chr1:165394000-165395200	Enhancers	Fetal Muscle Leg	muscle
7	chr1:165394000-165395200	Enhancers	Lung	lung
8	chr1:165394000-165395600	Enhancers	HepG2	liver
9	chr1:165394000-165400600	Weak transcription	Fetal Brain Male	brain
10	chr1:165394200-165395000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr1:165394200-165395000	Enhancers	Brain Hippocampus Middle	brain
12	chr1:165394200-165395000	Enhancers	Brain Substantia Nigra	brain
13	chr1:165394200-165395000	Enhancers	Right Atrium	heart
14	chr1:165394200-165396600	Enhancers	Psoas Muscle	Psoas
15	chr1:165394400-165395000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:165394400-165395000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr1:165394400-165395200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr1:165394400-165395200	Weak transcription	Fetal Intestine Small	intestine
19	chr1:165394400-165395200	Enhancers	Stomach Smooth Muscle	stomach
20	chr1:165394400-165395400	Enhancers	Ovary	ovary
21	chr1:165394400-165395600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:165394400-165395600	Weak transcription	Small Intestine	intestine
23	chr1:165394400-165396400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:165394400-165402800	Weak transcription	Brain Anterior Caudate	brain
25	chr1:165394400-165405800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:165394600-165395400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:165394600-165395600	Enhancers	Adipose Nuclei	Adipose
28	chr1:165394800-165395400	Enhancers	Fetal Lung	lung
29	chr1:165394800-165396600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr1:165394800-165396600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr1:165394800-165397200	Weak transcription	Brain Inferior Temporal Lobe	brain

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