Variant report

Variant	rs17471319
Chromosome Location	chr1:165451342-165451343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1160360	1.00[AMR][1000 genomes]
rs1409416	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17431161	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17431252	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17470525	0.93[AMR][1000 genomes]
rs17471395	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17471444	1.00[ASN][1000 genomes]
rs58847098	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6698369	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947508	chr1:165445780-165455520	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165438600-165453200	Weak transcription	Fetal Heart	heart
2	chr1:165443000-165451400	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:165450600-165452000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:165451200-165451600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr1:165451200-165451600	Enhancers	Hela-S3	cervix
6	chr1:165451200-165451600	Enhancers	HSMMtube	muscle
7	chr1:165451200-165451800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:165451200-165451800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:165451200-165452000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:165451200-165452000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:165451200-165452200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:165451200-165452200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:165451200-165452200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:165451200-165452200	Enhancers	HMEC	breast
15	chr1:165451200-165452400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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