Variant report

Variant	rs1409416
Chromosome Location	chr1:165452115-165452116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1160360	0.82[AMR][1000 genomes]
rs17431161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17471319	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17471395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17471444	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58847098	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947508	chr1:165445780-165455520	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165438600-165453200	Weak transcription	Fetal Heart	heart
2	chr1:165451200-165452200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:165451200-165452200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:165451200-165452200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:165451200-165452200	Enhancers	HMEC	breast
6	chr1:165451200-165452400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:165451400-165452200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:165451400-165452200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:165451800-165454200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:165451800-165459000	Weak transcription	Left Ventricle	heart
11	chr1:165452000-165452200	Bivalent Enhancer	HSMMtube	muscle
12	chr1:165452000-165453400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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