Variant report

Variant	rs17471395
Chromosome Location	chr1:165454112-165454113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1160360	0.82[AMR][1000 genomes]
rs1409416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17471319	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17471444	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57108086	1.00[AFR][1000 genomes]
rs58847098	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61220446	1.00[AFR][1000 genomes]
rs74118596	1.00[AFR][1000 genomes]
rs74118686	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947508	chr1:165445780-165455520	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165451800-165454200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:165451800-165459000	Weak transcription	Left Ventricle	heart
3	chr1:165453200-165454400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr1:165453200-165456400	Enhancers	Fetal Heart	heart
5	chr1:165453400-165454400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:165453600-165455600	Weak transcription	Psoas Muscle	Psoas
7	chr1:165454000-165459400	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:165454000-165461400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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