Variant report

Variant	rs3823666
Chromosome Location	chr7:22172280-22172281
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22170710..22173023-chr7:22178648..22180924,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1419755	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1859804	0.90[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs2302000	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs6972953	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22149800-22177600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:22150000-22177800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:22150200-22173200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:22153000-22193000	Strong transcription	Dnd41	blood
5	chr7:22155600-22178200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:22156000-22181000	Weak transcription	Gastric	stomach
7	chr7:22156000-22186600	Weak transcription	Brain Germinal Matrix	brain
8	chr7:22156800-22186400	Strong transcription	Liver	Liver
9	chr7:22157800-22174600	Weak transcription	Colonic Mucosa	Colon
10	chr7:22159800-22172400	Weak transcription	Fetal Stomach	stomach
11	chr7:22159800-22175800	Weak transcription	HSMMtube	muscle
12	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
13	chr7:22160000-22173600	Strong transcription	HepG2	liver
14	chr7:22160400-22183000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:22162000-22174800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:22162200-22181400	Weak transcription	Primary T cells from cord blood	blood
17	chr7:22162200-22186600	Weak transcription	GM12878-XiMat	blood
18	chr7:22162200-22198000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr7:22162400-22177800	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:22163000-22179000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:22163000-22187800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:22163000-22190600	Strong transcription	Fetal Thymus	thymus
23	chr7:22163200-22178800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:22163200-22181000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:22163200-22186800	Weak transcription	Right Atrium	heart
26	chr7:22163600-22179000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:22164200-22173800	Strong transcription	Duodenum Mucosa	Duodenum
28	chr7:22165000-22174200	Weak transcription	Psoas Muscle	Psoas
29	chr7:22165400-22183400	Weak transcription	Primary B cells from cord blood	blood
30	chr7:22166200-22178000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr7:22168000-22176200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:22168000-22178000	Weak transcription	Adipose Nuclei	Adipose
33	chr7:22168000-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:22168000-22195800	Weak transcription	NHEK	skin
35	chr7:22169200-22176200	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr7:22169400-22186600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:22169800-22172600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr7:22169800-22174400	Weak transcription	HUVEC	blood vessel
39	chr7:22169800-22178800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:22169800-22180600	Weak transcription	Fetal Kidney	kidney
41	chr7:22169800-22181000	Weak transcription	Right Ventricle	heart
42	chr7:22170000-22172600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:22170000-22177600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:22170200-22172600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:22170200-22175000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:22170200-22176400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:22170200-22177600	Weak transcription	Fetal Intestine Small	intestine
48	chr7:22170400-22172400	Weak transcription	Pancreas	Pancrea
49	chr7:22170400-22177800	Weak transcription	Fetal Brain Female	brain
50	chr7:22170800-22174000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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