Variant report

Variant	rs1419755
Chromosome Location	chr7:22166022-22166023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22163322..22168112-chr7:22173973..22177672,4	K562	blood:

Variant related genes	Relation type
ENSG00000136237	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1859804	0.90[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2302000	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.90[ASN][1000 genomes]
rs3807541	0.85[CHD][hapmap]
rs3823666	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6972953	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1419755	FERD3L	cis	cerebellum	SCAN

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22149800-22177600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:22150000-22177800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:22150200-22173200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:22153000-22193000	Strong transcription	Dnd41	blood
5	chr7:22154400-22169800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:22155600-22178200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:22156000-22167600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:22156000-22181000	Weak transcription	Gastric	stomach
9	chr7:22156000-22186600	Weak transcription	Brain Germinal Matrix	brain
10	chr7:22156800-22186400	Strong transcription	Liver	Liver
11	chr7:22157800-22174600	Weak transcription	Colonic Mucosa	Colon
12	chr7:22159000-22167400	Weak transcription	HMEC	breast
13	chr7:22159800-22172400	Weak transcription	Fetal Stomach	stomach
14	chr7:22159800-22175800	Weak transcription	HSMMtube	muscle
15	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
16	chr7:22160000-22173600	Strong transcription	HepG2	liver
17	chr7:22160400-22183000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:22161200-22168600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:22161200-22169000	Enhancers	HUVEC	blood vessel
20	chr7:22161400-22166200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:22161600-22169600	Weak transcription	Aorta	Aorta
22	chr7:22162000-22174800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:22162200-22166200	Strong transcription	Brain Anterior Caudate	brain
24	chr7:22162200-22167600	Weak transcription	Osteobl	bone
25	chr7:22162200-22181400	Weak transcription	Primary T cells from cord blood	blood
26	chr7:22162200-22186600	Weak transcription	GM12878-XiMat	blood
27	chr7:22162200-22198000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:22162400-22177800	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:22163000-22169400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:22163000-22179000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:22163000-22187800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:22163000-22190600	Strong transcription	Fetal Thymus	thymus
33	chr7:22163200-22167200	Strong transcription	Brain Cingulate Gyrus	brain
34	chr7:22163200-22167400	Weak transcription	NHEK	skin
35	chr7:22163200-22169200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:22163200-22169400	Weak transcription	Spleen	Spleen
37	chr7:22163200-22169600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:22163200-22178800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:22163200-22181000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:22163200-22186800	Weak transcription	Right Atrium	heart
41	chr7:22163600-22167800	Weak transcription	K562	blood
42	chr7:22163600-22179000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:22164200-22169000	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr7:22164200-22173800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr7:22164800-22166200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr7:22164800-22166200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr7:22164800-22166200	Strong transcription	Thymus	Thymus
48	chr7:22164800-22167000	Strong transcription	Fetal Intestine Small	intestine
49	chr7:22164800-22170400	Strong transcription	Fetal Intestine Large	intestine
50	chr7:22165000-22166200	Strong transcription	Lung	lung

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