Variant report

Variant	rs3807541
Chromosome Location	chr7:22167488-22167489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22163322..22168112-chr7:22173973..22177672,4	K562	blood:

Variant related genes	Relation type
ENSG00000136237	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10255474	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10260018	0.87[ASN][1000 genomes]
rs1419755	0.85[CHD][hapmap]
rs3779065	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3807535	0.83[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3807541	TOMM7	cis	parietal	SCAN

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22149800-22177600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:22150000-22177800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:22150200-22173200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:22153000-22193000	Strong transcription	Dnd41	blood
5	chr7:22154400-22169800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:22155600-22178200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:22156000-22167600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:22156000-22181000	Weak transcription	Gastric	stomach
9	chr7:22156000-22186600	Weak transcription	Brain Germinal Matrix	brain
10	chr7:22156800-22186400	Strong transcription	Liver	Liver
11	chr7:22157800-22174600	Weak transcription	Colonic Mucosa	Colon
12	chr7:22159800-22172400	Weak transcription	Fetal Stomach	stomach
13	chr7:22159800-22175800	Weak transcription	HSMMtube	muscle
14	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
15	chr7:22160000-22173600	Strong transcription	HepG2	liver
16	chr7:22160400-22183000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:22161200-22168600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:22161200-22169000	Enhancers	HUVEC	blood vessel
19	chr7:22161600-22169600	Weak transcription	Aorta	Aorta
20	chr7:22162000-22174800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:22162200-22167600	Weak transcription	Osteobl	bone
22	chr7:22162200-22181400	Weak transcription	Primary T cells from cord blood	blood
23	chr7:22162200-22186600	Weak transcription	GM12878-XiMat	blood
24	chr7:22162200-22198000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:22162400-22177800	Weak transcription	Fetal Muscle Leg	muscle
26	chr7:22163000-22169400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:22163000-22179000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:22163000-22187800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:22163000-22190600	Strong transcription	Fetal Thymus	thymus
30	chr7:22163200-22169200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr7:22163200-22169400	Weak transcription	Spleen	Spleen
32	chr7:22163200-22169600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:22163200-22178800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:22163200-22181000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:22163200-22186800	Weak transcription	Right Atrium	heart
36	chr7:22163600-22167800	Weak transcription	K562	blood
37	chr7:22163600-22179000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr7:22164200-22169000	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr7:22164200-22173800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr7:22164800-22170400	Strong transcription	Fetal Intestine Large	intestine
41	chr7:22165000-22174200	Weak transcription	Psoas Muscle	Psoas
42	chr7:22165200-22168000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:22165200-22169400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr7:22165400-22168600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr7:22165400-22168800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:22165400-22169400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr7:22165400-22169600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr7:22165400-22171800	Weak transcription	Brain Angular Gyrus	brain
49	chr7:22165400-22183400	Weak transcription	Primary B cells from cord blood	blood
50	chr7:22166000-22167600	Weak transcription	Brain Hippocampus Middle	brain

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