Variant report

Variant	rs3823753
Chromosome Location	chr7:96652547-96652548
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11762736	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13227082	0.81[AMR][1000 genomes]
rs3757492	0.81[AMR][1000 genomes]
rs3801289	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58292504	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96647000-96655200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
2	chr7:96648000-96654000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:96650000-96654200	Active TSS	Osteobl	bone
4	chr7:96650200-96653200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:96650400-96654200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:96650400-96654400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
7	chr7:96650800-96653600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:96651000-96653200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:96651000-96653400	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr7:96651200-96652800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr7:96651200-96653200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:96651200-96653200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
13	chr7:96651400-96653200	Bivalent/Poised TSS	Fetal Stomach	stomach
14	chr7:96651400-96653400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:96651400-96654000	Bivalent/Poised TSS	Fetal Brain Female	brain
16	chr7:96651400-96654400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:96651600-96652800	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
18	chr7:96651600-96653000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:96651600-96653200	Weak transcription	Right Atrium	heart
20	chr7:96651600-96653400	Weak transcription	Pancreas	Pancrea
21	chr7:96651600-96654400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:96651600-96654400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
23	chr7:96651600-96654400	Bivalent/Poised TSS	Fetal Lung	lung
24	chr7:96651800-96652600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
25	chr7:96651800-96653200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
26	chr7:96652000-96652600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
27	chr7:96652000-96653200	Weak transcription	Gastric	stomach
28	chr7:96652000-96654200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:96652000-96654200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr7:96652200-96652600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
31	chr7:96652200-96652800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
32	chr7:96652200-96652800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
33	chr7:96652200-96652800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr7:96652200-96653200	Bivalent/Poised TSS	Placenta	Placenta
35	chr7:96652200-96653400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:96652200-96654600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
37	chr7:96652400-96652600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
38	chr7:96652400-96652800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
39	chr7:96652400-96653000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
40	chr7:96652400-96653200	Active TSS	Ovary	ovary
41	chr7:96652400-96653400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
42	chr7:96652400-96653600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr7:96652400-96654600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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