Variant report

Variant	rs58292504
Chromosome Location	chr7:96629091-96629092
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11762736	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3801289	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3823753	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96625000-96644000	Bivalent/Poised TSS	Fetal Brain Female	brain
2	chr7:96625200-96631800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:96626000-96633800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:96626200-96633200	Weak transcription	Pancreas	Pancrea
5	chr7:96627400-96629600	Bivalent Enhancer	Fetal Brain Male	brain
6	chr7:96627400-96634800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:96627800-96631000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr7:96628000-96631000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr7:96628000-96643200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
10	chr7:96628400-96634000	Weak transcription	HepG2	liver
11	chr7:96628800-96629200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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