Variant report

Variant	rs38250
Chromosome Location	chr7:15945102-15945103
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10273798	0.83[EUR][1000 genomes]
rs10274526	0.81[EUR][1000 genomes]
rs12699758	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1528139	0.82[EUR][1000 genomes]
rs2530784	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs38221	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs38251	0.85[AFR][1000 genomes]
rs38258	0.89[AFR][1000 genomes]
rs6965426	0.86[AFR][1000 genomes]
rs768667	0.89[AFR][1000 genomes]
rs800712	0.86[EUR][1000 genomes]
rs800714	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs800716	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs800718	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs991471	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1017958	chr7:15910153-15956470	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15944800-15946400	Enhancers	Rectal Smooth Muscle	rectum
2	chr7:15944800-15946800	Enhancers	Colon Smooth Muscle	Colon
3	chr7:15945000-15945200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:15945000-15945800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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