Variant report
| Variant | rs991471 |
|---|---|
| Chromosome Location | chr7:15995239-15995240 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1013131 | 0.91[EUR][1000 genomes] |
| rs10228138 | 0.92[ASN][1000 genomes] |
| rs10257027 | 0.92[ASN][1000 genomes] |
| rs10273798 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10274526 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10950591 | 0.85[ASN][1000 genomes] |
| rs10950593 | 0.91[EUR][1000 genomes] |
| rs12699758 | 0.84[EUR][1000 genomes] |
| rs13228856 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1528134 | 0.81[EUR][1000 genomes] |
| rs1528139 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1528162 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1918857 | 0.92[EUR][1000 genomes] |
| rs1997263 | 0.81[ASN][1000 genomes] |
| rs1997264 | 0.82[ASN][1000 genomes] |
| rs2190941 | 0.80[ASN][1000 genomes] |
| rs2530784 | 0.86[EUR][1000 genomes] |
| rs2530785 | 0.83[ASN][1000 genomes] |
| rs38250 | 0.83[EUR][1000 genomes] |
| rs6461211 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6461212 | 0.83[EUR][1000 genomes] |
| rs6461213 | 0.83[EUR][1000 genomes] |
| rs6461214 | 0.83[EUR][1000 genomes] |
| rs6944544 | 0.86[ASN][1000 genomes] |
| rs6945328 | 0.83[EUR][1000 genomes] |
| rs7783065 | 0.91[EUR][1000 genomes] |
| rs7790471 | 0.84[EUR][1000 genomes] |
| rs7794657 | 0.86[ASN][1000 genomes] |
| rs7809565 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs800714 | 0.87[EUR][1000 genomes] |
| rs800716 | 0.86[EUR][1000 genomes] |
| rs800718 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv523199 | chr7:15582208-16042596 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016642 | chr7:15884061-16799788 | Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 3 | nsv949309 | chr7:15986709-16236162 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:15992400-16010800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr7:15994200-15995400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 3 | chr7:15995200-15995400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
