Variant report

Variant	rs3825943
Chromosome Location	chr15:74891467-74891468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74851516..74853661-chr15:74891010..74892976,2	K562	blood:
2	chr15:74885278..74889186-chr15:74890286..74893326,4	K562	blood:
3	chr15:74885692..74889192-chr15:74889315..74893477,4	MCF-7	breast:
4	chr15:74891163..74893467-chr15:74893596..74895699,2	K562	blood:
5	chr15:74882811..74885228-chr15:74890404..74892323,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLK3-1	chr15:74890841-74891878	NONHSAT047251

No data

Variant related genes	Relation type
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11853859	1.00[CEU][hapmap]
rs12439944	1.00[CEU][hapmap]
rs12593213	1.00[CEU][hapmap]
rs12593251	1.00[CEU][hapmap]
rs16972714	1.00[CEU][hapmap]
rs2069513	0.85[AMR][1000 genomes]
rs3743484	1.00[CEU][hapmap]
rs7497749	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv1812223	chr15:74869438-74948063	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	esv1814078	chr15:74884447-74948063	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv457204	chr15:74885091-74948063	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv569991	chr15:74885091-74948063	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv542434	chr15:74885329-74929552	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1047943	chr15:74885329-74940857	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
10	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74881200-74892200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74881400-74892200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:74883400-74892000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:74888200-74893800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:74890400-74891600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr15:74890400-74891600	Flanking Active TSS	Primary B cells from peripheral blood	blood
7	chr15:74890400-74891600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:74890400-74891600	Flanking Active TSS	Fetal Thymus	thymus
9	chr15:74890400-74891600	Flanking Active TSS	NHEK	skin
10	chr15:74890400-74891800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:74890400-74891800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr15:74890400-74891800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr15:74890400-74891800	Flanking Active TSS	Hela-S3	cervix
14	chr15:74890400-74891800	Flanking Active TSS	HepG2	liver
15	chr15:74890400-74892000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:74890400-74892000	Flanking Active TSS	Dnd41	blood
17	chr15:74890400-74892000	Flanking Active TSS	K562	blood
18	chr15:74890400-74892200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:74890400-74892200	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr15:74890400-74892400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr15:74890400-74892400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr15:74890600-74891600	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr15:74890600-74891600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:74890600-74891600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr15:74890600-74891600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr15:74890600-74891600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:74890600-74891600	Active TSS	Brain Germinal Matrix	brain
28	chr15:74890600-74891800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
29	chr15:74890600-74891800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:74890600-74891800	Active TSS	Brain Angular Gyrus	brain
31	chr15:74890600-74891800	Active TSS	Brain Substantia Nigra	brain
32	chr15:74890600-74891800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
33	chr15:74890600-74891800	Flanking Active TSS	Fetal Muscle Trunk	muscle
34	chr15:74890600-74891800	Flanking Active TSS	HSMM	muscle
35	chr15:74890600-74892200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr15:74890600-74892200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:74890600-74892200	Active TSS	Fetal Kidney	kidney
38	chr15:74890800-74891600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:74890800-74891600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr15:74890800-74891600	Flanking Active TSS	Liver	Liver
41	chr15:74890800-74891600	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr15:74890800-74891600	Flanking Active TSS	Fetal Muscle Leg	muscle
43	chr15:74890800-74891600	Transcr. at gene 5' and 3'	Placenta	Placenta
44	chr15:74890800-74891600	Active TSS	Fetal Stomach	stomach
45	chr15:74890800-74891600	Active TSS	Gastric	stomach
46	chr15:74890800-74891600	Active TSS	Left Ventricle	heart
47	chr15:74890800-74891600	Active TSS	Ovary	ovary
48	chr15:74890800-74891600	Active TSS	Psoas Muscle	Psoas
49	chr15:74890800-74891600	Active TSS	Rectal Smooth Muscle	rectum
50	chr15:74890800-74891600	Active TSS	Right Atrium	heart

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