Variant report

Variant	rs3743484
Chromosome Location	chr15:75044400-75044401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75043196..75045391-chr15:75075402..75077625,2	K562	blood:
2	chr15:75037842..75040616-chr15:75043779..75046442,3	K562	blood:
3	chr15:74929455..74931233-chr15:75042400..75045089,2	K562	blood:
4	chr15:75008936..75010510-chr15:75042594..75044929,2	K562	blood:
5	chr15:75041437..75045142-chr15:75051536..75054125,3	K562	blood:
6	chr15:74932436..74935063-chr15:75043587..75046477,2	MCF-7	breast:
7	chr15:75035073..75037761-chr15:75042329..75044643,2	MCF-7	breast:
8	chr15:75042997..75044715-chr15:75054154..75056433,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11853859	1.00[CEU][hapmap]
rs12439944	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs12593213	1.00[CEU][hapmap]
rs12593251	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs1531162	0.81[JPT][hapmap]
rs1531163	0.81[JPT][hapmap]
rs16972714	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2069520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2229730	0.81[JPT][hapmap]
rs28397782	0.81[JPT][hapmap]
rs2899827	0.81[JPT][hapmap]
rs3743486	0.81[JPT][hapmap]
rs3825943	1.00[CEU][hapmap]
rs4886620	0.81[JPT][hapmap]
rs55711332	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7497749	1.00[CEU][hapmap]
rs8039046	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75040600-75044600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:75041200-75044400	Flanking Active TSS	Liver	Liver
3	chr15:75041600-75044800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:75042400-75044600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:75043400-75045800	Enhancers	Placenta	Placenta
6	chr15:75043600-75044600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:75043600-75045600	Enhancers	Lung	lung
8	chr15:75043600-75046000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr15:75043800-75051200	Weak transcription	HepG2	liver
10	chr15:75044200-75044800	Active TSS	Spleen	Spleen
11	chr15:75044200-75045000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:75044200-75045600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:75044400-75044800	Enhancers	Liver	Liver
14	chr15:75044400-75045600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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