Variant report

Variant	rs55711332
Chromosome Location	chr15:75045207-75045208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75043196..75045391-chr15:75075402..75077625,2	K562	blood:
2	chr15:75037842..75040616-chr15:75043779..75046442,3	K562	blood:
3	chr15:74932436..74935063-chr15:75043587..75046477,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12593251	0.82[AMR][1000 genomes]
rs2069520	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3743484	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75043400-75045800	Enhancers	Placenta	Placenta
2	chr15:75043600-75045600	Enhancers	Lung	lung
3	chr15:75043600-75046000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr15:75043800-75051200	Weak transcription	HepG2	liver
5	chr15:75044200-75045600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:75044400-75045600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:75044600-75045600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:75044600-75045600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:75044600-75045600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:75044600-75045800	Enhancers	HSMMtube	muscle
11	chr15:75044800-75045400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:75044800-75045400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:75044800-75045400	Weak transcription	Liver	Liver
14	chr15:75044800-75045600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr15:75044800-75045600	Enhancers	Fetal Lung	lung
16	chr15:75044800-75045600	Enhancers	HSMM	muscle
17	chr15:75044800-75045600	Bivalent Enhancer	NHDF-Ad	bronchial
18	chr15:75044800-75045600	Enhancers	NHEK	skin
19	chr15:75044800-75047000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:75044800-75062600	Weak transcription	Right Atrium	heart
21	chr15:75045000-75045600	Enhancers	Fetal Kidney	kidney
22	chr15:75045200-75045600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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