Variant report

Variant	rs3826396
Chromosome Location	chr17:46032804-46032805
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:45914566..45916883-chr17:46031350..46033702,2	MCF-7	breast:
2	chr17:46004717..46007682-chr17:46032533..46035119,2	K562	blood:
3	chr17:46032611..46035777-chr17:46183682..46186625,3	MCF-7	breast:
4	chr17:46031321..46037809-chr17:46043555..46050276,13	K562	blood:
5	chr17:45969751..45975935-chr17:46032072..46038613,14	MCF-7	breast:
6	chr17:45917528..45920214-chr17:46032690..46035678,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108465	Chromatin interaction
ENSG00000264920	Chromatin interaction
ENSG00000141295	Chromatin interaction
ENSG00000167182	Chromatin interaction
ENSG00000002919	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11079802	0.84[ASN][1000 genomes]
rs11651753	0.95[ASN][1000 genomes]
rs16949720	0.90[ASN][1000 genomes]
rs2002136	0.92[ASN][1000 genomes]
rs2255814	0.97[EUR][1000 genomes]
rs2428608	0.92[ASN][1000 genomes]
rs2525083	0.96[EUR][1000 genomes]
rs2525095	0.97[ASN][1000 genomes]
rs2525097	0.80[EUR][1000 genomes]
rs2525109	0.95[ASN][1000 genomes]
rs2525110	0.95[ASN][1000 genomes]
rs2597164	0.82[EUR][1000 genomes]
rs2597169	0.97[ASN][1000 genomes]
rs2597178	0.83[EUR][1000 genomes]
rs2737	0.85[EUR][1000 genomes]
rs2875735	0.97[ASN][1000 genomes]
rs3764398	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4793738	0.97[ASN][1000 genomes]
rs4794331	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57768342	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61665404	0.97[ASN][1000 genomes]
rs72823505	0.99[ASN][1000 genomes]
rs736387	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv908575	chr17:45957591-46049533	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46019800-46034200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:46019800-46047600	Weak transcription	Aorta	Aorta
3	chr17:46020000-46034600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr17:46027200-46034400	Weak transcription	Hela-S3	cervix
5	chr17:46027200-46047200	Weak transcription	Spleen	Spleen
6	chr17:46027400-46033800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr17:46027400-46033800	Weak transcription	NHDF-Ad	bronchial
8	chr17:46027400-46034000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr17:46027400-46034200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr17:46027400-46034400	Weak transcription	Fetal Lung	lung
11	chr17:46027400-46034600	Weak transcription	K562	blood
12	chr17:46027400-46034800	Weak transcription	NH-A	brain
13	chr17:46027600-46033000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr17:46027600-46033800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr17:46027600-46034200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr17:46027600-46034400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr17:46027600-46034800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr17:46027600-46047400	Weak transcription	Right Ventricle	heart
19	chr17:46027600-46047600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr17:46027800-46033600	Weak transcription	Brain Angular Gyrus	brain
21	chr17:46027800-46034000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr17:46027800-46034200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr17:46028000-46033000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr17:46028000-46047400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr17:46028000-46047600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr17:46029200-46035200	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
27	chr17:46029600-46034600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr17:46029800-46034200	Weak transcription	Brain Anterior Caudate	brain
29	chr17:46030000-46033600	Weak transcription	GM12878-XiMat	blood
30	chr17:46030000-46035000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr17:46030200-46033600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr17:46030200-46034400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr17:46030200-46045800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr17:46030400-46034200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr17:46030400-46035200	Weak transcription	Osteobl	bone
36	chr17:46030600-46035600	Active TSS	Colonic Mucosa	Colon
37	chr17:46031200-46034200	Active TSS	Fetal Stomach	stomach
38	chr17:46031200-46035200	Active TSS	Sigmoid Colon	Sigmoid Colon
39	chr17:46031400-46034600	Weak transcription	NHEK	skin
40	chr17:46031400-46035600	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr17:46031400-46036000	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr17:46031400-46039000	Weak transcription	Primary T cells from cord blood	blood
43	chr17:46031800-46033200	Weak transcription	Lung	lung
44	chr17:46031800-46034400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr17:46032000-46037800	Active TSS	Rectal Smooth Muscle	rectum
46	chr17:46032200-46033000	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr17:46032200-46033200	Active TSS	Pancreas	Pancrea
48	chr17:46032200-46035400	Active TSS	Stomach Mucosa	stomach
49	chr17:46032200-46036200	Active TSS	Duodenum Mucosa	Duodenum
50	chr17:46032600-46033000	Enhancers	Esophagus	oesophagus

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