Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10048757	0.83[JPT][hapmap]
rs10206846	0.90[CHB][hapmap]
rs10497944	0.81[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11895168	0.85[JPT][hapmap]
rs13014117	0.84[CEU][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs13409566	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1595062	0.85[JPT][hapmap]
rs1595065	0.85[JPT][hapmap]
rs1816533	0.85[JPT][hapmap]
rs1821656	0.84[JPT][hapmap]
rs1836724	0.83[CHD][hapmap]
rs1972820	0.85[JPT][hapmap]
rs3791692	0.88[CEU][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4672612	0.85[JPT][hapmap]
rs4673615	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6710253	0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs6728196	0.83[ASN][1000 genomes]
rs7561756	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs934607	0.88[CEU][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.88[MKK][hapmap]
rs9808028	0.85[CHB][hapmap];0.87[GIH][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv460065	chr2:212244520-212276710	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
4	nsv584315	chr2:212244520-212276710	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv875777	chr2:212274937-212295875	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212273600-212278400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212275200-212278200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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