Variant report

Variant	rs3828366
Chromosome Location	chr3:68587884-68587885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13077992	0.92[ASW][hapmap];0.86[MKK][hapmap];0.83[YRI][hapmap]
rs17245086	0.81[CEU][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs28435803	0.93[EUR][1000 genomes]
rs35166656	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9819803	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68581600-68590000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:68585200-68588000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:68585400-68589800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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