Variant report

Variant	rs13077992
Chromosome Location	chr3:68586322-68586323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13094511	1.00[CHB][hapmap]
rs1355526	0.92[CEU][hapmap]
rs1510358	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1511905	0.97[EUR][1000 genomes]
rs1605980	0.88[CEU][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]
rs17245086	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3828366	0.92[ASW][hapmap];0.86[MKK][hapmap];0.83[YRI][hapmap]
rs5005702	1.00[CEU][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs62246068	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653892	0.88[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]
rs9814117	0.97[EUR][1000 genomes]
rs9838165	0.96[CEU][hapmap]
rs9846667	0.83[ASW][hapmap];0.80[CEU][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68581600-68590000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:68585200-68588000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:68585400-68589800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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