Variant report

Variant	rs62246068
Chromosome Location	chr3:68585359-68585360
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13077992	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510358	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1511905	0.97[EUR][1000 genomes]
rs17245086	1.00[ASN][1000 genomes]
rs5005702	0.97[EUR][1000 genomes]
rs9814117	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68580400-68585400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:68580400-68585600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:68581400-68585400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:68581600-68590000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:68582600-68585400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:68585000-68585800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr3:68585200-68588000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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