Variant report
| Variant | rs1605980 |
|---|---|
| Chromosome Location | chr3:68539224-68539225 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs12485360 | 1.00[CHB][hapmap] |
| rs13076215 | 1.00[CHB][hapmap] |
| rs13077992 | 0.88[CEU][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13094511 | 0.83[CHD][hapmap] |
| rs1355526 | 0.88[CEU][hapmap] |
| rs1397247 | 1.00[CHB][hapmap] |
| rs1510358 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1511905 | 0.81[EUR][1000 genomes] |
| rs17245086 | 0.83[ASN][1000 genomes] |
| rs17831305 | 0.89[MEX][hapmap] |
| rs2221757 | 1.00[CHB][hapmap] |
| rs5005702 | 0.88[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs62246068 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7653892 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs9814117 | 0.80[EUR][1000 genomes] |
| rs9819753 | 0.87[CEU][hapmap] |
| rs9838165 | 0.92[CEU][hapmap] |
| rs9846667 | 0.91[CEU][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1832396 | chr3:68478762-68641509 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv876927 | chr3:68505398-68544442 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv876928 | chr3:68505398-68551172 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv876929 | chr3:68508137-68565824 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
