Variant report

Variant	rs13076215
Chromosome Location	chr3:68508276-68508277
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12485360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs13081659	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs13082036	0.96[CEU][hapmap];0.93[YRI][hapmap]
rs13087359	0.80[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1397247	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap]
rs1510348	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1510358	1.00[CHB][hapmap]
rs1553823	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1588430	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1605980	1.00[CHB][hapmap]
rs1877000	0.81[EUR][1000 genomes]
rs1877001	0.81[EUR][1000 genomes]
rs2221757	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34778733	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7653892	1.00[CHB][hapmap]
rs907082	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs971231	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9866276	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68507200-68508400	Enhancers	Fetal Stomach	stomach
2	chr3:68507400-68509200	Enhancers	NHDF-Ad	bronchial
3	chr3:68507800-68508400	Enhancers	Fetal Lung	lung
4	chr3:68508200-68508400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:68508200-68508400	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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