Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:68506304..68508381-chr3:68512161..68513963,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12485360	0.88[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap]
rs13076215	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13081659	0.88[ASW][hapmap];0.92[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap]
rs13082036	0.89[CEU][hapmap];0.86[YRI][hapmap]
rs13087359	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1510348	0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs1510358	1.00[CHB][hapmap]
rs1553823	0.83[ASW][hapmap];0.92[CEU][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1588430	0.84[EUR][1000 genomes]
rs1605980	1.00[CHB][hapmap]
rs1877001	0.87[TSI][hapmap]
rs2221757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34778733	0.85[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4855477	0.80[MKK][hapmap]
rs7653892	1.00[CHB][hapmap]
rs907082	0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs971231	0.90[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9836240	0.87[TSI][hapmap]
rs9866276	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9990195	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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