Variant report

Variant	rs4855477
Chromosome Location	chr3:68485073-68485074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1039878	0.86[LWK][hapmap];0.91[MEX][hapmap];0.86[YRI][hapmap]
rs13072630	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13081659	0.93[GIH][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap]
rs13092201	0.82[TSI][hapmap]
rs1397247	0.80[MKK][hapmap]
rs1553823	0.86[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes]
rs17830713	0.86[LWK][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap]
rs1912457	0.83[LWK][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap]
rs2136715	0.83[LWK][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap]
rs35657439	0.96[ASN][1000 genomes]
rs35940240	0.95[ASN][1000 genomes]
rs4855469	0.82[TSI][hapmap]
rs6549122	0.83[LWK][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap]
rs6767029	0.81[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.86[YRI][hapmap]
rs6785673	0.86[TSI][hapmap]
rs7622452	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7633887	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs876610	0.86[LWK][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap]
rs9310080	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9822547	0.83[MEX][hapmap];0.89[TSI][hapmap]
rs9822557	0.83[MEX][hapmap];0.89[TSI][hapmap]
rs9826916	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9832666	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9833308	0.82[TSI][hapmap]
rs9850187	0.86[LWK][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap]
rs9990177	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68477800-68487400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68483600-68486200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:68483800-68486200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:68484400-68485800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:68484600-68486200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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