Variant report

Variant	rs876610
Chromosome Location	chr3:68470376-68470377
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1039878	0.95[LWK][hapmap];0.87[MEX][hapmap];0.84[MKK][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12489559	0.89[CEU][hapmap]
rs13072630	0.82[AFR][1000 genomes]
rs17830081	0.81[CEU][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17830713	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912457	0.80[ASW][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2136715	0.80[ASW][hapmap];0.89[CEU][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4855467	0.87[MEX][hapmap]
rs4855468	0.82[YRI][hapmap]
rs4855469	0.81[CEU][hapmap]
rs4855472	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4855477	0.86[LWK][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap]
rs61679746	1.00[ASN][1000 genomes]
rs62245815	0.99[ASN][1000 genomes]
rs6549122	0.80[ASW][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6767029	0.87[ASW][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs6767035	0.84[AFR][1000 genomes]
rs6785673	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs876609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9310080	0.81[TSI][hapmap]
rs9822547	0.85[CEU][hapmap];0.89[TSI][hapmap]
rs9822557	0.85[CEU][hapmap];0.89[TSI][hapmap]
rs9830713	0.85[CEU][hapmap]
rs9842711	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9850187	0.93[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68467200-68472400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:68469600-68470400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:68469800-68477400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:68470000-68470400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:68470000-68470400	Enhancers	HUES64 Cell Line	embryonic stem cell

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