Variant report

Variant	rs61679746
Chromosome Location	chr3:68470124-68470125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17830713	1.00[ASN][1000 genomes]
rs62245815	0.99[ASN][1000 genomes]
rs876609	0.97[ASN][1000 genomes]
rs876610	1.00[ASN][1000 genomes]
rs9842711	0.97[ASN][1000 genomes]
rs9850187	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68467200-68472400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:68469600-68470400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:68469800-68477400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:68470000-68470200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:68470000-68470400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:68470000-68470400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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